Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 0.0e+00 1107.8 566 100.0
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 6.4e-273 943.7 566 84.1
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 9.5e-269 929.9 572 81.3
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 1.4e-267 926.0 568 81.9
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.2e-264 914.8 573 81.5
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.1e-263 912.1 565 81.1
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 2.7e-263 911.8 550 83.8
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 1.7e-262 909.1 575 79.0
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.7e-262 909.1 566 79.5
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 5.1e-262 907.5 569 80.5
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 5.1e-262 907.5 569 80.3
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.1e-261 906.4 569 80.3
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 7.3e-261 903.7 565 80.7
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 8.1e-260 900.2 567 80.1
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 2.6e-258 895.2 569 80.5
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 4.4e-258 894.4 569 80.1
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 5.8e-258 894.0 545 82.2
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 7.6e-258 893.6 618 74.3
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 2.9e-257 891.7 568 79.8
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 2.9e-257 891.7 529 81.9
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 2.9e-257 891.7 551 80.6
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.9e-257 891.7 551 80.6
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 6.4e-257 890.6 592 76.7
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.1e-256 889.8 557 79.7
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 1.1e-256 889.8 529 83.2
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.4e-256 889.4 574 78.4
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.4e-256 889.4 574 78.4
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 1.9e-256 889.0 563 78.2
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.9e-256 889.0 578 76.8
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 7.1e-256 887.1 557 79.5
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.2e-255 886.3 542 80.3
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.6e-255 885.9 554 79.8
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 4.6e-255 884.4 579 77.9
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 6.0e-255 884.0 563 78.3
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 1.3e-254 882.9 562 79.0
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 2.3e-254 882.1 560 78.8
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 2.3e-254 882.1 567 78.5
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 3.0e-254 881.7 548 78.6
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 3.9e-254 881.3 565 78.8
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 4.3e-253 877.9 544 79.6
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 5.6e-253 877.5 567 78.7
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 1.6e-252 875.9 550 78.5
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 2.8e-252 875.2 539 80.0
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 2.4e-251 872.1 554 77.6
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 4.0e-251 871.3 554 76.7
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 6.9e-251 870.5 591 73.9
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 2.6e-250 868.6 565 77.5
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 9.9e-250 866.7 594 74.4
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 1.7e-249 865.9 581 76.4
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 2.2e-249 865.5 535 80.0
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 4.9e-249 864.4 534 78.1
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 8.4e-249 863.6 533 80.5
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 1.1e-248 863.2 603 74.0
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 3.2e-248 861.7 650 68.8
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 5.4e-248 860.9 585 74.9
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 7.1e-248 860.5 593 73.7
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 7.1e-248 860.5 534 77.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 9.3e-248 860.1 554 77.8
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 9.3e-248 860.1 569 75.6
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.7e-247 858.6 554 77.3
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.0e-246 856.7 565 76.5
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 8.7e-246 853.6 556 77.7
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 3.3e-245 851.7 554 76.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 4.3e-245 851.3 553 77.6
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 2.1e-244 849.0 566 74.4
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 4.5e-242 841.3 538 75.8
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 5.8e-242 840.9 570 74.7
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 1.3e-241 839.7 553 75.9
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 4.6e-239 831.2 564 73.4
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 2.3e-238 828.9 564 73.6
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 3.0e-238 828.6 580 72.2
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 6.7e-238 827.4 564 73.2
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 8.7e-238 827.0 558 75.1
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 1.3e-236 823.2 597 70.0
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 1.3e-236 823.2 567 73.0
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 3.1e-235 818.5 597 71.2
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 1.2e-234 816.6 665 64.1
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 2.0e-234 815.8 594 69.5
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 2.9e-233 812.0 597 69.3
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 3.8e-233 811.6 588 70.7
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 2.5e-232 808.9 596 69.3
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 7.4e-229 797.3 565 72.2
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 7.4e-229 797.3 534 75.1
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 3.1e-227 792.0 665 63.8
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.5e-226 789.6 580 67.9
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.2e-225 785.8 566 71.2
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 7.9e-223 777.3 535 73.5
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 1.8e-222 776.2 623 66.3
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 1.8e-222 776.2 599 65.3
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 3.0e-222 775.4 560 71.1
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 5.7e-221 771.2 546 70.5
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 8.2e-220 767.3 471 81.1
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 2.8e-212 742.3 479 76.2
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 3.1e-211 738.8 409 87.8
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 1.3e-209 733.4 466 80.5
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 4.2e-208 728.4 529 68.4
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 4.2e-208 728.4 532 72.2
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 2.0e-205 719.5 558 65.9
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 1.3e-204 716.8 557 65.5
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 4.1e-203 711.8 436 82.1
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 1.6e-202 709.9 557 65.0
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 4.5e-202 708.4 563 64.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 3.8e-201 705.3 530 67.4
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 9.4e-200 700.7 541 65.2
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 2.2e-196 689.5 526 66.3
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 3.1e-195 685.6 476 75.4
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 2.7e-194 682.6 561 62.9
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.9e-193 679.1 526 65.6
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.4e-190 670.2 542 63.1
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 8.8e-190 667.5 416 77.4
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 8.8e-190 667.5 416 77.4
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.7e-188 663.3 490 66.9
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 1.9e-184 649.8 468 68.6
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 2.6e-181 639.4 455 69.7
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 4.1e-179 632.1 619 54.8
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 1.9e-176 623.2 366 82.2
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 8.3e-172 607.8 352 84.1
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.4e-171 606.3 397 75.8
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 8.9e-142 508.1 378 66.4
Medtr6g091930 Medicago truncatula HOM05D003169 ORTHO05D003700 5.8e-141 505.4 362 68.0
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.7e-138 496.5 277 86.6
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 5.5e-123 445.7 350 67.4
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 5.1e-121 439.1 311 72.3
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 8.1e-119 431.8 567 47.1
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 3.4e-117 426.4 294 72.8
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 1.5e-109 401.0 420 48.6
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.3e-108 397.9 300 67.7
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 8.5e-108 395.2 249 79.9
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.5e-107 393.7 247 81.8
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 6.1e-90 335.9 324 58.0
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.3e-84 318.2 387 45.2
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.9e-83 314.3 427 42.4
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 8.8e-81 305.4 407 45.0
SEGI_39235 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.8e-73 281.2 168 80.4
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 5.2e-73 279.6 475 38.1
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.6e-72 277.3 466 38.8
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 2.6e-72 277.3 479 38.8
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 7.7e-69 265.8 446 38.1
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 6.1e-66 256.1 151 84.8
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 9.8e-64 248.8 173 73.4
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 4.9e-63 246.5 266 54.1
MD07G1097900 Malus domestica HOM05D003169 ORTHO05D003700 4.5e-61 240.0 158 76.6
Cpa.g.sc32.155 Carica papaya HOM05D003169 ORTHO05D003700 4.3e-59 233.4 125 88.8
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 8.9e-57 225.7 148 77.7
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 3.7e-55 220.3 128 85.9
TPR.G3613 Trifolium pratense HOM05D003169 ORTHO05D003700 7.0e-54 216.1 184 61.4
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 9.2e-54 215.7 128 84.4
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.0e-53 214.5 124 84.7
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 2.5e-51 207.6 143 72.0
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 1.0e-44 185.7 165 63.0
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.1e-43 182.2 123 73.2
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 1.5e-40 171.8 140 62.9
SGA_v2.0_scaffold4G01863 Striga asiatica HOM05D003169 ORTHO05D003700 1.1e-38 165.6 117 72.6
Thhalv10000387m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 5.6e-35 153.3 94 72.3
VMungo1127G0791 Vigna mungo HOM05D003169 ORTHO05D003700 8.1e-34 149.4 137 61.3
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 7.8e-29 132.9 80 82.5
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 1.1e-27 129.0 126 56.3
Hund12039 Selenicereus undatus HOM05D003169 ORTHO05D003700 1.9e-27 128.3 118 50.8
arahy.Tifrunner.gnm1.ann1.2P0S20 Arachis hypogaea HOM05D003169 ORTHO05D003700 1.6e-26 125.2 78 73.1
TPR.G373 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-26 124.8 122 54.1
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 1.4e-22 112.1 83 67.5
MELO3C035414.2 Cucumis melo HOM05D003169 ORTHO05D003700 3.5e-21 107.5 76 60.5
Actinidia33342 Actinidia chinensis HOM05D003169 ORTHO05D003700 4.3e-19 100.5 50 96.0
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 5.6e-19 100.1 64 73.4
Actinidia33341 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.4e-17 95.5 136 45.6
QL04p095737 Quercus lobata HOM05D003169 ORTHO05D003700 1.5e-16 92.0 156 37.2
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 8.4e-15 86.3 98 43.9
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 9.3e-14 82.8 48 83.3
Os04g0610200 Oryza sativa ssp. japonica HOM05D034463 ORTHO05D036998 2.7e-13 81.3 115 38.3
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 3.7e-10 70.9 33 90.9
Cre02.g095052 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.2e-08 65.9 63 52.4
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 9.9e-08 62.8 58 53.4


User provided reference genes

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