Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g07750 Coffea canephora HOM05D003894 ORTHO05D004584 8.6e-84 313.5 151 100.0
Cc04_g06480 Coffea canephora HOM05D003894 ORTHO05D004584 1.1e-70 270.0 200 70.0
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 2.6e-32 142.5 252 40.9
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 1.1e-27 127.1 226 38.9
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 4.4e-27 125.2 242 37.6
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 1.3e-26 123.6 261 34.1
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 1.7e-26 123.2 241 37.3
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 1.7e-26 123.2 241 37.3
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 2.2e-26 122.9 241 37.8
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 2.2e-26 122.9 238 37.4
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 4.8e-26 121.7 241 37.3
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 8.2e-26 120.9 241 36.9
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 1.8e-25 119.8 238 36.1
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 2.4e-25 119.4 238 36.6
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.4e-25 119.4 238 37.0
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 2.4e-25 119.4 241 37.8
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 2.4e-25 119.4 239 36.4
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 3.1e-25 119.0 241 35.7
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 4.1e-25 118.6 241 36.9
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 4.1e-25 118.6 241 36.1
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 4.1e-25 118.6 242 35.5
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 4.1e-25 118.6 238 36.6
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 5.3e-25 118.2 241 34.4
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 5.3e-25 118.2 242 36.0
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 6.9e-25 117.9 242 35.1
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 9.1e-25 117.5 243 37.4
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 9.1e-25 117.5 242 36.4
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 1.2e-24 117.1 228 36.4
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.5e-24 116.7 235 36.2
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 2.0e-24 116.3 240 36.7
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 2.6e-24 115.9 240 34.6
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 3.4e-24 115.5 241 36.9
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 4.5e-24 115.2 241 35.7
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 5.9e-24 114.8 241 37.3
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 5.9e-24 114.8 239 35.6
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 7.7e-24 114.4 244 35.7
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 7.7e-24 114.4 244 35.7
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 7.7e-24 114.4 238 36.6
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 7.7e-24 114.4 234 37.2
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.0e-23 114.0 240 35.0
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.0e-23 114.0 240 34.6
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 1.0e-23 114.0 240 35.8
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 1.0e-23 114.0 243 35.4
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.0e-23 114.0 233 36.9
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 1.0e-23 114.0 241 35.3
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 1.3e-23 113.6 240 35.0
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 1.3e-23 113.6 243 35.0
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.3e-23 113.6 235 36.6
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 1.7e-23 113.2 241 36.9
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 1.7e-23 113.2 235 34.9
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 2.2e-23 112.8 239 35.1
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 2.9e-23 112.5 241 36.1
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 3.8e-23 112.1 241 35.7
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 3.8e-23 112.1 242 36.8
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 5.0e-23 111.7 236 34.3
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 5.0e-23 111.7 268 32.8
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 1.1e-22 110.5 235 34.9
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 1.1e-22 110.5 253 32.4
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 1.4e-22 110.2 241 34.9
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 1.4e-22 110.2 235 35.7
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 3.2e-22 109.0 236 34.7
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 4.2e-22 108.6 241 36.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 9.4e-22 107.5 241 33.6
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 9.4e-22 107.5 241 34.9
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 9.4e-22 107.5 241 33.6
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.2e-21 107.1 241 33.6
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 1.2e-21 107.1 241 34.9
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 1.2e-21 107.1 241 34.9
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 1.2e-21 107.1 238 32.8
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 1.2e-21 107.1 235 34.0
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 1.2e-21 107.1 239 34.7
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 1.6e-21 106.7 241 34.4
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 1.6e-21 106.7 241 33.6
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 1.6e-21 106.7 241 33.6
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 1.6e-21 106.7 241 33.6
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 1.6e-21 106.7 241 36.1
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 2.1e-21 106.3 241 33.6
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 2.7e-21 105.9 228 35.5
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 34.0
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 33.2
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 34.4
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 35.7
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 35.7
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 33.2
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 35.7
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.6e-21 105.5 241 35.7
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 3.6e-21 105.5 265 31.3
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 4.7e-21 105.1 229 34.9
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 4.7e-21 105.1 242 35.5
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 4.7e-21 105.1 242 35.5
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 4.7e-21 105.1 241 35.3
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 4.7e-21 105.1 231 32.9
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 4.7e-21 105.1 231 34.2
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 6.1e-21 104.8 241 33.2
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 7.9e-21 104.4 235 34.0
Oeu024051.1 Olea europaea HOM05D003894 ORTHO05D004584 7.9e-21 104.4 59 81.4
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 7.9e-21 104.4 232 34.1
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 7.9e-21 104.4 241 34.0
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 1.0e-20 104.0 241 33.2
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.0e-20 104.0 241 35.7
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 1.0e-20 104.0 235 34.5
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 1.0e-20 104.0 241 35.3
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 1.0e-20 104.0 243 33.3
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 1.4e-20 103.6 233 33.0
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.8e-20 103.2 169 40.2
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.8e-20 103.2 235 33.2
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 3.0e-20 102.4 240 33.3
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 3.9e-20 102.1 240 33.8
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 1.5e-19 100.1 234 32.9
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 2.0e-19 99.8 235 33.2
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 2.0e-19 99.8 234 32.1
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 2.6e-19 99.4 241 33.2
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 2.6e-19 99.4 228 35.5
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 3.3e-19 99.0 234 34.6
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 4.4e-19 98.6 66 71.2
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 4.4e-19 98.6 235 34.5
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 4.4e-19 98.6 261 29.9
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 5.7e-19 98.2 235 32.8
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 2.2e-18 96.3 240 32.5
Cfa012736 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.8e-18 95.9 57 77.2
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.8e-18 95.9 52 80.8
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.8e-18 95.9 52 80.8
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 2.8e-18 95.9 233 31.8
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 2.8e-18 95.9 228 32.5
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 4.8e-18 95.1 58 77.6
Haze_07897 Corylus avellana HOM05D003894 ORTHO05D004584 1.1e-17 94.0 56 75.0
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 4.1e-17 92.0 235 31.1
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 1.6e-16 90.1 51 78.4
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 1.6e-16 90.1 55 72.7
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 3.5e-16 89.0 55 72.7
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 7.7e-16 87.8 62 62.9
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 1.7e-15 86.7 229 29.3
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 1.1e-14 84.0 58 67.2
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 2.5e-14 82.8 55 63.6
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 1.2e-13 80.5 233 31.3
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 2.1e-13 79.7 233 29.2
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 2.1e-13 79.7 53 69.8
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 2.7e-13 79.3 220 30.5
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 3.6e-13 79.0 237 28.7
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 1.0e-12 77.4 233 30.0
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 1.0e-12 77.4 53 69.8
Haze_07898 Corylus avellana HOM05D003894 ORTHO05D004584 4.0e-12 75.5 63 60.3
CDE04G2654 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 6.7e-12 74.7 53 66.0
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 1.5e-11 73.6 237 28.3
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 2.6e-11 72.8 53 64.2
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 2.6e-11 72.8 53 64.2
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 4.4e-11 72.0 57 59.6
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 4.4e-11 72.0 53 62.3
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 5.7e-11 71.6 53 64.2
Glyma.11G034200 Glycine max HOM05D003894 ORTHO05D004584 1.7e-10 70.1 46 69.6
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 8.2e-10 67.8 41 70.7
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 8.2e-10 67.8 53 60.4
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-09 67.4 56 62.5
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-09 67.4 56 62.5
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-09 67.4 56 62.5
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-09 67.4 56 62.5
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-09 67.4 56 62.5
Lsat_1_v5_gn_6_107601 Lactuca sativa HOM05D003894 ORTHO05D004584 3.1e-09 65.9 53 62.3
Glyma.11G034300 Glycine max HOM05D003894 ORTHO05D004584 5.3e-09 65.1 52 59.6
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 5.3e-09 65.1 53 56.6
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 7.0e-09 64.7 63 54.0
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 7.0e-09 64.7 63 54.0
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 7.0e-09 64.7 63 54.0
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 3.5e-08 62.4 41 63.4
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.9e-06 56.6 41 58.5


User provided reference genes

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