Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06870 Coffea canephora HOM05D003455 ORTHO05D004165 1.6e-46 189.1 98 100.0
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 8.2e-27 123.6 82 80.5
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 8.5e-24 113.6 81 75.3
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 1.9e-23 112.5 82 72.0
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 3.2e-23 111.7 82 70.7
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 5.5e-23 110.9 82 70.7
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 7.2e-23 110.5 82 72.0
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 1.2e-22 109.8 82 70.7
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 1.6e-22 109.4 82 70.7
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 1.6e-22 109.4 82 72.0
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 2.1e-22 109.0 82 69.5
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 2.7e-22 108.6 82 69.5
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.7e-22 108.6 82 69.5
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.7e-22 108.6 80 71.2
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.7e-22 108.6 82 68.3
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 3.6e-22 108.2 82 69.5
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 4.7e-22 107.8 82 68.3
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 4.7e-22 107.8 82 69.5
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 6.1e-22 107.5 82 70.7
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 6.1e-22 107.5 82 70.7
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 6.1e-22 107.5 82 68.3
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 6.1e-22 107.5 82 68.3
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 8.0e-22 107.1 82 68.3
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 8.0e-22 107.1 82 68.3
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 1.4e-21 106.3 80 70.0
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.8e-21 105.9 82 68.3
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.8e-21 105.9 82 69.5
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.8e-21 105.9 82 69.5
Haze_14415 Corylus avellana HOM05D003455 ORTHO05D004165 1.8e-21 105.9 113 55.8
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 1.8e-21 105.9 82 68.3
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 1.8e-21 105.9 82 68.3
BolC3t13319H Brassica oleracea HOM05D003455 ORTHO05D004165 2.3e-21 105.5 82 68.3
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 2.3e-21 105.5 82 70.7
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 3.0e-21 105.1 82 67.1
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 3.0e-21 105.1 82 67.1
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 3.0e-21 105.1 81 67.9
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 3.0e-21 105.1 82 68.3
C03p08220 Brassica napus HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 67.1
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 69.5
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 68.3
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 68.3
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 68.3
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 4.0e-21 104.8 82 67.1
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 5.2e-21 104.4 82 64.6
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 6.7e-21 104.0 82 68.3
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 6.7e-21 104.0 79 68.4
vmacro18140 Vaccinium macrocarpon HOM05D003455 ORTHO05D004165 6.7e-21 104.0 82 67.1
A03p07220 Brassica napus HOM05D003455 ORTHO05D004165 8.8e-21 103.6 82 67.1
BraA03t10044Z Brassica rapa HOM05D003455 ORTHO05D004165 8.8e-21 103.6 82 67.1
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 8.8e-21 103.6 82 65.9
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 1.1e-20 103.2 82 65.9
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.1e-20 103.2 82 67.1
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 67.1
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 67.1
MELO3C022038.2 Cucumis melo HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 67.1
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 67.1
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 68.3
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 67.1
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.5e-20 102.8 82 65.9
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 2.0e-20 102.4 82 65.9
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 2.0e-20 102.4 82 65.9
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 2.6e-20 102.1 82 67.1
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 2.6e-20 102.1 82 67.1
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 3.3e-20 101.7 82 64.6
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 3.3e-20 101.7 82 65.9
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 3.3e-20 101.7 82 67.1
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 5.7e-20 100.9 82 65.9
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 5.7e-20 100.9 82 65.9
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 7.4e-20 100.5 82 63.4
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 7.4e-20 100.5 82 63.4
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 7.4e-20 100.5 81 65.4
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 7.4e-20 100.5 82 64.6
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 7.4e-20 100.5 81 64.2
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 7.4e-20 100.5 80 66.2
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 7.4e-20 100.5 80 66.2
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 7.4e-20 100.5 82 64.6
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 9.7e-20 100.1 80 67.5
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 9.7e-20 100.1 82 64.6
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 9.7e-20 100.1 81 63.0
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 9.7e-20 100.1 81 65.4
Aa31LG5G12730 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.3e-19 99.8 82 67.1
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 1.3e-19 99.8 82 68.3
ECA247G2972 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.7e-19 99.4 92 58.7
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 1.7e-19 99.4 82 65.9
SEGI_08931 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 1.7e-19 99.4 81 64.2
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 2.2e-19 99.0 82 65.9
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 2.2e-19 99.0 82 62.2
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 2.2e-19 99.0 94 60.6
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 2.2e-19 99.0 82 65.9
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 2.8e-19 98.6 82 63.4
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 3.7e-19 98.2 82 63.4
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 3.7e-19 98.2 82 63.4
AT3G02200 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 4.8e-19 97.8 82 64.6
BcaB01g05043 Brassica carinata HOM05D003455 ORTHO05D004165 4.8e-19 97.8 82 63.4
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 4.8e-19 97.8 82 61.0
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 4.8e-19 97.8 82 65.9
MD17G1062900 Malus domestica HOM05D003455 ORTHO05D004165 4.8e-19 97.8 80 63.8
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 4.8e-19 97.8 82 64.6
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 6.3e-19 97.4 82 62.2
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 6.3e-19 97.4 82 64.6
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 8.2e-19 97.1 82 64.6
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 8.2e-19 97.1 82 62.2
SEGI_28709 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 8.2e-19 97.1 81 63.0
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 1.1e-18 96.7 82 63.4
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.1e-18 96.7 82 63.4
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 1.1e-18 96.7 81 63.0
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.4e-18 96.3 82 62.2
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 1.4e-18 96.3 82 63.4
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 1.4e-18 96.3 82 63.4
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 1.4e-18 96.3 82 63.4
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 1.4e-18 96.3 82 63.4
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 1.4e-18 96.3 81 63.0
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 1.8e-18 95.9 82 63.4
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.8e-18 95.9 82 61.0
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 1.8e-18 95.9 82 63.4
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 2.4e-18 95.5 82 63.4
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 2.4e-18 95.5 82 62.2
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 62.2
BcaC01g04456 Brassica carinata HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 65.9
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 65.9
BcaC01g04476 Brassica carinata HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 65.9
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 65.9
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 61.0
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 3.1e-18 95.1 82 61.0
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 4.1e-18 94.7 82 62.2
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 4.1e-18 94.7 82 62.2
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 4.1e-18 94.7 82 61.0
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 4.1e-18 94.7 82 61.0
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 57.3
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 64.6
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 65.9
CDE09G1009 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 5.3e-18 94.4 78 61.5
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 62.2
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 62.2
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 5.3e-18 94.4 82 59.8
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 7.0e-18 94.0 82 61.0
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 7.0e-18 94.0 82 61.0
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 9.1e-18 93.6 82 64.6
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 1.2e-17 93.2 81 60.5
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 1.6e-17 92.8 82 59.8
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.6e-17 92.0 81 59.3
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 4.5e-17 91.3 82 57.3
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 4.5e-17 91.3 82 58.5
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 4.5e-17 91.3 82 61.0
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 5.9e-17 90.9 82 57.3
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 5.9e-17 90.9 82 58.5
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 7.7e-17 90.5 82 63.4
SMO174G0231 Selaginella moellendorffii HOM05D003455 ORTHO05D004165 7.7e-17 90.5 81 60.5
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.0e-16 90.1 82 57.3
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 1.0e-16 90.1 81 58.0
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.3e-16 89.7 97 53.6
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 2.9e-16 88.6 81 58.0
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 3.8e-16 88.2 82 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3585 Anthoceros agrestis HOM05D003455 ORTHO05D004165 8.5e-16 87.0 82 54.9
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 5.5e-15 84.3 82 54.9
Mapoly0097s0065 Marchantia polymorpha HOM05D003455 ORTHO05D004165 1.2e-14 83.2 80 56.2
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 4.7e-14 81.3 81 56.8
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 6.1e-14 80.9 83 53.0
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 1.0e-13 80.1 128 41.4
Pp3c14_18640 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.8e-13 79.3 85 50.6
Pp3c14_18645 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.8e-13 79.3 85 50.6
Pp3c17_21330 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.8e-13 79.3 85 50.6
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 4.0e-13 78.2 72 59.7
RcHm_v2.0_Chr2g0165441 Rosa chinensis HOM05D003455 ORTHO05D004165 6.8e-13 77.4 87 55.2
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 7.5e-12 73.9 175 34.3
CBR_g38096 Chara braunii HOM05D003455 ORTHO05D004165 1.3e-11 73.2 83 48.2
Lalb_Chr21g0318341 Lupinus albus HOM05D003455 ORTHO05D004165 8.3e-11 70.5 79 50.6
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 2.7e-09 65.5 47 61.7
PGSC0003DMG400037406 Solanum tuberosum HOM05D003455 ORTHO05D004165 5.9e-09 64.3 47 61.7
EL10As12g24037 Beta vulgaris HOM05D003455 ORTHO05D004165 1.3e-08 63.2 48 60.4
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 6.5e-08 60.8 57 52.6
RcHm_v2.0_Chr2g0165331 Rosa chinensis HOM05D003455 ORTHO05D004165 8.5e-08 60.5 48 60.4
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 1.1e-07 60.1 48 56.2


User provided reference genes

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