Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06710 Coffea canephora HOM05D002068 ORTHO05D002029 8.5e-37 157.1 124 100.0
DCAR_008272 Daucus carota HOM05D002068 ORTHO05D002029 2.1e-19 99.4 85 62.4
AL4G31260 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 1.4e-18 96.7 92 72.8
Dinv25215 Davidia involucrata HOM05D002068 ORTHO05D002029 1.4e-18 96.7 101 64.4
Thhalv10016759m.g Eutrema salsugineum HOM05D002068 ORTHO05D002029 1.4e-18 96.7 88 70.5
Sp4g17450 Schrenkiella parvula HOM05D002068 ORTHO05D002029 1.4e-18 96.7 88 72.7
AT2G35230 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 4.0e-18 95.1 88 69.3
Hma1.2p1_0303F.1_g119120 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 4.0e-18 95.1 124 48.4
PGSC0003DMG400002107 Solanum tuberosum HOM05D002068 ORTHO05D002029 4.0e-18 95.1 83 59.0
CARHR129400 Cardamine hirsuta HOM05D002068 ORTHO05D002029 5.2e-18 94.7 86 62.8
Sopen06g021390 Solanum pennellii HOM05D002068 ORTHO05D002029 1.2e-17 93.6 83 59.0
vmacro00330 Vaccinium macrocarpon HOM05D002068 ORTHO05D002029 2.0e-17 92.8 82 53.7
Solyc06g061190.1 Solanum lycopersicum HOM05D002068 ORTHO05D002029 5.7e-17 91.3 83 57.8
TWI81G0802 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 5.7e-17 91.3 131 45.8
CAN.G201.29 Capsicum annuum HOM05D002068 ORTHO05D002029 9.8e-17 90.5 83 57.8
MSTRG.12156 Avicennia marina HOM05D002068 ORTHO05D002029 1.4e-15 86.7 83 55.4
Peaxi162Scf00615g00064 Petunia axillaris HOM05D002068 ORTHO05D002029 3.1e-15 85.5 125 60.8
Eucgr.D02200 Eucalyptus grandis HOM05D002068 ORTHO05D002029 5.4e-15 84.7 121 47.9
Aa31LG9G15270 Aethionema arabicum HOM05D002068 ORTHO05D002029 1.2e-14 83.6 87 52.9
arahy.Tifrunner.gnm1.ann1.Q5RTUN Arachis hypogaea HOM05D002068 ORTHO05D002029 1.6e-14 83.2 125 47.2
arahy.Tifrunner.gnm1.ann1.VYGU2E Arachis hypogaea HOM05D002068 ORTHO05D002029 1.6e-14 83.2 125 47.2
BcaB06g28833 Brassica carinata HOM05D002068 ORTHO05D002029 1.6e-14 83.2 84 53.6
CsaV3_3G049180 Cucumis sativus L. HOM05D002068 ORTHO05D002029 2.0e-14 82.8 103 44.7
VMungo1215G2655 Vigna mungo HOM05D002068 ORTHO05D002029 3.5e-14 82.0 83 54.2
Cpa.g.sc71.70 Carica papaya HOM05D002068 ORTHO05D002029 7.7e-14 80.9 83 62.7
BcaB02g09468 Brassica carinata HOM05D002068 ORTHO05D002029 1.3e-13 80.1 127 53.5
MELO3C003409.2 Cucumis melo HOM05D002068 ORTHO05D002029 2.2e-13 79.3 80 50.0
Phvul.003G285600 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 2.9e-13 79.0 120 42.5
Phvul.002G141800 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 5.0e-13 78.2 125 52.0
Lsat_1_v5_gn_6_65520 Lactuca sativa HOM05D002068 ORTHO05D002029 6.5e-13 77.8 80 53.8
Sed0014879 Sechium edule HOM05D002068 ORTHO05D002029 8.5e-13 77.4 123 55.3
VMungo0251G3624 Vigna mungo HOM05D002068 ORTHO05D002029 8.5e-13 77.4 79 53.2
Nitab4.5_0004604g0010 Nicotiana tabacum HOM05D002068 ORTHO05D002029 1.1e-12 77.0 83 51.8
BcaC02g11626 Brassica carinata HOM05D002068 ORTHO05D002029 1.5e-12 76.6 125 54.4
C04p12950 Brassica napus HOM05D002068 ORTHO05D002029 1.5e-12 76.6 125 55.2
BolC4t22938H Brassica oleracea HOM05D002068 ORTHO05D002029 1.5e-12 76.6 125 54.4
Os10g0577200 Oryza sativa ssp. japonica HOM05D002068 ORTHO05D002029 1.5e-12 76.6 88 63.6
THA.LOC104814442 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 2.5e-12 75.9 87 50.6
Lj8C300T9 Lonicera japonica HOM05D002068 ORTHO05D002029 3.2e-12 75.5 124 55.6
BcaC01g05736 Brassica carinata HOM05D002068 ORTHO05D002029 4.2e-12 75.1 86 51.2
C03p22700 Brassica napus HOM05D002068 ORTHO05D002029 4.2e-12 75.1 86 51.2
BolC3t14669H Brassica oleracea HOM05D002068 ORTHO05D002029 4.2e-12 75.1 86 51.2
Dinv28957 Davidia involucrata HOM05D002068 ORTHO05D002029 2.1e-11 72.8 127 51.2
A05p10530 Brassica napus HOM05D002068 ORTHO05D002029 3.6e-11 72.0 125 48.0
BraA05t19991Z Brassica rapa HOM05D002068 ORTHO05D002029 3.6e-11 72.0 125 48.0
A03p19480 Brassica napus HOM05D002068 ORTHO05D002029 4.7e-11 71.6 86 48.8
BraA03t11201Z Brassica rapa HOM05D002068 ORTHO05D002029 8.0e-11 70.9 86 48.8
CSS0037727 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 4.0e-10 68.6 132 39.4
CSS0039799 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 4.0e-10 68.6 132 39.4
Actinidia03376 Actinidia chinensis HOM05D002068 ORTHO05D002029 1.5e-09 66.6 82 50.0
Lalb_Chr16g0381391 Lupinus albus HOM05D002068 ORTHO05D002029 1.5e-09 66.6 83 47.0
Sed0021104 Sechium edule HOM05D002068 ORTHO05D002029 1.5e-09 66.6 78 47.4
AUR62018716 Chenopodium quinoa HOM05D002068 ORTHO05D002029 2.0e-09 66.2 82 46.3
Nitab4.5_0000256g0320 Nicotiana tabacum HOM05D002068 ORTHO05D002029 2.6e-09 65.9 90 46.7
Hund14399 Selenicereus undatus HOM05D002068 ORTHO05D002029 4.4e-09 65.1 133 38.3
Oeu006980.1 Olea europaea HOM05D002068 ORTHO05D002029 5.7e-09 64.7 55 54.5
Sc01g0007430 Simmondsia chinensis HOM05D002068 ORTHO05D002029 5.7e-09 64.7 85 49.4
Oeu006981.1 Olea europaea HOM05D002068 ORTHO05D002029 2.2e-08 62.8 55 54.5
Peaxi162Scf00460g00033 Petunia axillaris HOM05D002068 ORTHO05D002029 2.2e-08 62.8 83 44.6
AUR62007291 Chenopodium quinoa HOM05D002068 ORTHO05D002029 4.9e-08 61.6 85 48.2
ECA233G6139 Erigeron canadensis HOM05D002068 ORTHO05D002029 4.9e-08 61.6 132 38.6
Lalb_Chr09g0325671 Lupinus albus HOM05D002068 ORTHO05D002029 4.9e-08 61.6 125 44.0
AL1G46870 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 6.3e-08 61.2 80 43.8
Cc08_g02760 Coffea canephora HOM05D002068 ORTHO05D002029 6.3e-08 61.2 136 66.9
Migut.E00932 Erythranthe guttata HOM05D002068 ORTHO05D002029 1.4e-07 60.1 128 46.1
Carub.0001s3100 Capsella rubella HOM05D002068 ORTHO05D002029 2.4e-07 59.3 124 36.3
PSO151G0076 Papaver somniferum HOM05D002068 ORTHO05D002029 5.4e-07 58.2 96 37.5
PSO339G3558 Papaver somniferum HOM05D002068 ORTHO05D002029 5.4e-07 58.2 96 37.5
Gorai.004G185400 Gossypium raimondii HOM05D002068 ORTHO05D002029 1.6e-06 56.6 81 45.7
Prupe.5G036600 Prunus persica HOM05D002068 ORTHO05D002029 2.0e-06 56.2 56 51.8
Ca_06078_v3 Cicer arietinum L. HOM05D002068 ORTHO05D002029 2.7e-06 55.8 134 36.6
Haze_08229 Corylus avellana HOM05D002068 ORTHO05D002029 2.7e-06 55.8 124 41.9
AT1G32610 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 3.5e-06 55.5 80 42.5
QL12p005199 Quercus lobata HOM05D002068 ORTHO05D002029 3.5e-06 55.5 122 45.9
Glyma.08G272000 Glycine max HOM05D002068 ORTHO05D002029 5.9e-06 54.7 68 44.1
Cfa012439 Carpinus fangiana HOM05D002068 ORTHO05D002029 7.7e-06 54.3 124 41.1


User provided reference genes

Program Settings