Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.5e-96 356.3 195 100.0
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.6e-66 256.5 196 73.0
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.1e-66 256.1 196 73.5
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.4e-65 253.4 196 73.0
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 8.9e-65 250.8 196 73.0
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 1.2e-64 250.4 196 73.0
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.5e-64 250.0 196 73.0
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 3.4e-64 248.8 196 73.5
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 7.5e-64 247.7 195 71.3
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 8.3e-63 244.2 189 70.9
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.8e-62 243.0 196 71.9
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 2.4e-62 242.7 196 69.9
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 2.4e-62 242.7 196 69.9
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 2.4e-62 242.7 196 67.3
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 5.4e-62 241.5 196 69.9
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.6e-61 240.0 196 67.3
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 3.5e-61 238.8 196 68.4
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.0e-60 237.3 196 66.8
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 1.7e-60 236.5 194 65.5
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.0e-60 235.0 194 67.0
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.0e-60 235.0 194 67.0
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.1e-59 233.8 196 69.9
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.1e-59 233.8 195 70.3
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.9e-59 233.0 196 66.3
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.9e-59 233.0 196 72.4
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 4.3e-59 231.9 196 67.3
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 5.6e-59 231.5 196 66.3
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 6.2e-58 228.0 196 66.8
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 8.0e-58 227.6 187 65.8
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 1.4e-57 226.9 197 64.0
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 1.4e-57 226.9 195 66.2
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.8e-57 226.5 196 65.3
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 2.3e-57 226.1 196 63.3
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.2e-56 223.8 194 63.4
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.2e-56 223.8 193 67.4
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.2e-56 223.8 196 66.8
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.2e-56 223.8 195 64.6
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 2.0e-56 223.0 196 64.3
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 2.0e-56 223.0 195 64.6
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 2.6e-56 222.6 184 67.9
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 3.4e-56 222.2 194 68.0
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.4e-56 222.2 196 66.3
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 4.4e-56 221.9 195 68.7
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 4.4e-56 221.9 200 64.0
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.3e-55 220.3 193 64.2
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.7e-55 219.9 195 63.6
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 2.2e-55 219.5 194 64.9
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 4.9e-55 218.4 194 62.4
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.4e-54 216.1 194 62.9
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 2.4e-54 216.1 195 65.6
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 4.1e-54 215.3 193 62.7
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 5.4e-54 214.9 197 61.4
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 7.0e-54 214.5 195 61.5
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 2.7e-53 212.6 198 65.2
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 4.6e-53 211.8 173 68.8
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 4.6e-53 211.8 194 63.4
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 6.0e-53 211.5 194 64.4
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.7e-52 209.9 193 62.7
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 3.0e-52 209.1 201 64.2
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 6.6e-52 208.0 193 66.3
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 8.6e-52 207.6 217 60.4
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.9e-51 206.5 195 61.0
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 1.9e-51 206.5 196 62.2
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 3.3e-51 205.7 195 60.5
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 7.3e-51 204.5 197 60.4
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 3.6e-50 202.2 201 62.7
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 3.6e-50 202.2 193 63.2
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 3.6e-50 202.2 243 50.2
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 8.1e-50 201.1 197 62.4
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.4e-49 200.3 195 61.5
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.4e-49 200.3 172 67.4
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 1.4e-49 200.3 196 58.2
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 1.4e-49 200.3 196 58.2
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.8e-49 199.9 209 56.9
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 3.1e-49 199.1 193 62.2
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 5.2e-49 198.4 178 61.8
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.5e-48 196.8 200 58.0
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 2.6e-48 196.1 193 63.2
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.6e-48 196.1 190 57.9
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 4.4e-48 195.3 194 59.3
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 7.5e-48 194.5 197 60.9
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.1e-46 190.7 194 56.2
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.4e-46 190.3 189 57.1
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 9.2e-46 187.6 172 60.5
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 4.6e-45 185.3 195 60.5
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 7.8e-45 184.5 181 59.1
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 3.9e-44 182.2 200 55.5
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 3.9e-44 182.2 196 54.6
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 8.6e-44 181.0 177 65.0
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 3.3e-43 179.1 150 68.0
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 2.8e-42 176.0 149 65.8
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 4.7e-42 175.3 196 53.6
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 6.8e-41 171.4 195 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 5.8e-40 168.3 187 49.7
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 9.9e-40 167.5 196 51.5
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 1.7e-39 166.8 194 54.6
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 1.9e-38 163.3 195 54.4
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 5.4e-38 161.8 197 54.8
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 4.6e-37 158.7 188 47.9
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 2.3e-36 156.4 195 49.7
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 3.9e-36 155.6 195 50.3
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.1e-36 155.2 148 62.2
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 9.6e-35 151.0 196 50.0
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 1.6e-34 150.2 209 45.5
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 2.1e-34 149.8 196 46.9
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 2.4e-33 146.4 225 48.0
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 2.0e-32 143.3 149 58.4
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 9.9e-32 141.0 195 50.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 9.9e-32 141.0 195 46.7
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 9.9e-32 141.0 195 46.7
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 4.9e-31 138.7 153 55.6
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 3.2e-30 136.0 191 43.5
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 9.3e-30 134.4 83 84.3
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.2e-29 134.0 190 43.2
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.1e-29 133.3 83 83.1
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.7e-29 132.9 195 45.6
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 6.0e-29 131.7 205 43.9
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 2.3e-28 129.8 83 80.7
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 9.6e-27 124.4 207 40.6
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 9.6e-27 124.4 72 90.3
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 2.6e-24 116.3 172 45.9
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 4.9e-23 112.1 150 50.0
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 2.4e-22 109.8 112 58.0
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 5.4e-22 108.6 143 49.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 9.3e-22 107.8 151 47.0
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-20 104.0 78 73.1
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.8e-20 103.6 90 60.0
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.6e-19 98.6 101 62.4
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 2.1e-18 96.7 59 84.7
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 4.8e-18 95.5 84 60.7
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 1.4e-17 94.0 85 61.2
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 6.9e-17 91.7 161 42.9
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 4.5e-16 89.0 90 57.8
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 7.6e-16 88.2 73 57.5
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 4.2e-14 82.4 64 76.6
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.6e-13 80.5 74 54.1
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 1.8e-12 77.0 140 40.0
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 1.1e-11 74.3 185 31.9
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 1.9e-11 73.6 77 59.7
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 5.5e-06 55.5 90 42.2


User provided reference genes

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