Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05890 Coffea canephora HOM05D000366 ORTHO05D000437 2.4e-60 235.3 121 100.0
vmacro11922 Vaccinium macrocarpon HOM05D000366 ORTHO05D000437 2.6e-14 82.4 76 52.6
Cc05_g11270 Coffea canephora HOM05D000366 ORTHO05D000437 9.8e-14 80.5 77 45.5
CSS0049132 Camellia sinensis var. sinensis HOM05D000366 ORTHO05D000437 1.7e-13 79.7 77 45.5
Rhsim06G0206400 Rhododendron simsii HOM05D000366 ORTHO05D000437 1.4e-12 76.6 76 48.7
CSS0001097 Camellia sinensis var. sinensis HOM05D000366 ORTHO05D000437 1.9e-12 76.3 76 44.7
Actinidia12564 Actinidia chinensis HOM05D000366 ORTHO05D000437 7.1e-12 74.3 82 41.5
Actinidia35218 Actinidia chinensis HOM05D000366 ORTHO05D000437 1.6e-11 73.2 77 45.5
MSTRG.12872 Avicennia marina HOM05D000366 ORTHO05D000437 1.6e-11 73.2 77 42.9
Dinv14976 Davidia involucrata HOM05D000366 ORTHO05D000437 1.6e-11 73.2 76 47.4
Actinidia31603 Actinidia chinensis HOM05D000366 ORTHO05D000437 2.1e-11 72.8 83 43.4
Ca_03999_v3 Cicer arietinum L. HOM05D000366 ORTHO05D000437 3.5e-11 72.0 78 46.2
Lj3g0018614 Lotus japonicus HOM05D000366 ORTHO05D000437 7.8e-11 70.9 76 42.1
Lalb_Chr01g0016641 Lupinus albus HOM05D000366 ORTHO05D000437 1.3e-10 70.1 76 42.1
Lalb_Chr20g0109351 Lupinus albus HOM05D000366 ORTHO05D000437 2.3e-10 69.3 76 40.8
Oeu051127.1 Olea europaea HOM05D000366 ORTHO05D000437 2.3e-10 69.3 76 42.1
Dinv18351 Davidia involucrata HOM05D000366 ORTHO05D000437 3.9e-10 68.6 76 44.7
Oeu061352.1 Olea europaea HOM05D000366 ORTHO05D000437 3.9e-10 68.6 77 40.3
Glyma.13G271100 Glycine max HOM05D000366 ORTHO05D000437 6.6e-10 67.8 76 40.8
Migut.H01986 Erythranthe guttata HOM05D000366 ORTHO05D000437 8.6e-10 67.4 77 41.6
Nn1g09076 Nelumbo nucifera HOM05D000366 ORTHO05D000437 8.6e-10 67.4 76 40.8
CiPaw.11G161800 Carya illinoinensis HOM05D000366 ORTHO05D000437 1.1e-09 67.0 76 43.4
Cc11_g03970 Coffea canephora HOM05D000366 ORTHO05D000437 1.5e-09 66.6 78 46.2
Glyma.12G228700 Glycine max HOM05D000366 ORTHO05D000437 1.9e-09 66.2 76 40.8
Lj1C832G6 Lonicera japonica HOM05D000366 ORTHO05D000437 1.9e-09 66.2 78 43.6
arahy.Tifrunner.gnm1.ann1.7Z9IPQ Arachis hypogaea HOM05D000366 ORTHO05D000437 2.5e-09 65.9 76 39.5
arahy.Tifrunner.gnm1.ann1.JLX6YP Arachis hypogaea HOM05D000366 ORTHO05D000437 2.5e-09 65.9 76 39.5
TAR626G0976 Trochodendron aralioides HOM05D000366 ORTHO05D000437 2.5e-09 65.9 76 38.2
HanXRQChr10g0304861 Helianthus annuus HOM05D000366 ORTHO05D000437 4.3e-09 65.1 78 42.3
Psat5g238000 Pisum sativum HOM05D000366 ORTHO05D000437 4.3e-09 65.1 78 39.7
SalBow7G4451 Salvia bowleyana HOM05D000366 ORTHO05D000437 4.3e-09 65.1 77 40.3
TPR.G30903 Trifolium pratense HOM05D000366 ORTHO05D000437 5.6e-09 64.7 78 39.7
Atru.chr2.2204 Acer truncatum HOM05D000366 ORTHO05D000437 7.3e-09 64.3 76 39.5
CAN.G162.14 Capsicum annuum HOM05D000366 ORTHO05D000437 7.3e-09 64.3 77 44.2
CANSAT35G0453 Cannabis sativa HOM05D000366 ORTHO05D000437 9.5e-09 63.9 76 42.1
PGSC0003DMG400012431 Solanum tuberosum HOM05D000366 ORTHO05D000437 9.5e-09 63.9 77 45.5
Solyc07g062600.4 Solanum lycopersicum HOM05D000366 ORTHO05D000437 1.2e-08 63.5 77 44.2
Sopen07g030830 Solanum pennellii HOM05D000366 ORTHO05D000437 1.2e-08 63.5 77 44.2
DCAR_021018 Daucus carota HOM05D000366 ORTHO05D000437 1.6e-08 63.2 77 42.9
Peaxi162Scf00069g02134 Petunia axillaris HOM05D000366 ORTHO05D000437 1.6e-08 63.2 77 41.6
Sabra16G0257700 Salix brachista HOM05D000366 ORTHO05D000437 3.6e-08 62.0 78 41.0
Lj8C150G3 Lonicera japonica HOM05D000366 ORTHO05D000437 4.7e-08 61.6 77 35.1
Manes.15G092800 Manihot esculenta HOM05D000366 ORTHO05D000437 6.2e-08 61.2 76 38.2
ATR0787G219 Amborella trichopoda HOM05D000366 ORTHO05D000437 8.1e-08 60.8 78 38.5
Thecc.07G107600 Theobroma cacao HOM05D000366 ORTHO05D000437 8.1e-08 60.8 76 34.2
Potri.001G392801 Populus trichocarpa HOM05D000366 ORTHO05D000437 1.1e-07 60.5 76 38.2
COL.COLO4_17591 Corchorus olitorius HOM05D000366 ORTHO05D000437 5.2e-07 58.2 76 36.8
Duzib213G0779 Durio zibethinus HOM05D000366 ORTHO05D000437 5.2e-07 58.2 76 34.2
Gohir.A11G287200 Gossypium hirsutum HOM05D000366 ORTHO05D000437 8.9e-07 57.4 76 32.9
Gohir.D11G305900 Gossypium hirsutum HOM05D000366 ORTHO05D000437 8.9e-07 57.4 76 32.9
Gorai.007G326300 Gossypium raimondii HOM05D000366 ORTHO05D000437 8.9e-07 57.4 76 32.9
Ciclev10018500m.g Citrus clementina HOM05D000366 ORTHO05D000437 2.0e-06 56.2 76 35.5
Gohir.D13G153200 Gossypium hirsutum HOM05D000366 ORTHO05D000437 2.0e-06 56.2 76 34.2
Gorai.013G173100 Gossypium raimondii HOM05D000366 ORTHO05D000437 2.0e-06 56.2 76 34.2
PGR083G2734 Punica granatum HOM05D000366 ORTHO05D000437 2.0e-06 56.2 77 36.4
ECA240G0457 Erigeron canadensis HOM05D000366 ORTHO05D000437 2.6e-06 55.8 76 38.2
vmacro09499 Vaccinium macrocarpon HOM05D000366 ORTHO05D000437 2.6e-06 55.8 98 33.7
Nn051s41923 Nelumbo nucifera HOM05D000366 ORTHO05D000437 4.4e-06 55.1 58 41.4
GSVIVG01014219001 Vitis vinifera HOM05D000366 ORTHO05D000437 7.6e-06 54.3 76 36.8


User provided reference genes

Program Settings