Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 3.4e-175 618.2 316 100.0
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 2.3e-155 552.4 311 88.7
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 3.2e-133 478.8 289 81.3
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 9.4e-133 477.2 304 77.3
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.2e-132 476.9 295 79.7
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.1e-132 476.1 304 77.3
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.1e-132 476.1 276 83.3
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.7e-132 475.7 295 79.7
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 6.1e-132 474.6 295 76.9
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.4e-131 473.4 292 79.5
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 6.8e-131 471.1 302 77.5
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 8.8e-131 470.7 292 76.0
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 1.2e-130 470.3 298 77.9
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 1.5e-130 469.9 294 78.2
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 2.0e-130 469.5 295 78.3
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 5.7e-130 468.0 293 78.2
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 5.7e-130 468.0 293 77.8
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 7.5e-130 467.6 289 79.6
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 9.8e-130 467.2 306 75.5
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 9.8e-130 467.2 290 77.2
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 1.3e-129 466.8 293 77.8
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 1.7e-129 466.5 296 77.4
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 2.2e-129 466.1 294 77.6
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 8.3e-129 464.2 293 77.5
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 8.3e-129 464.2 295 76.9
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 1.4e-128 463.4 276 80.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 1.4e-128 463.4 294 77.2
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 2.4e-128 462.6 302 75.5
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 2.4e-128 462.6 306 74.8
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.1e-128 462.2 293 76.1
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.1e-128 462.2 293 76.1
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 4.1e-128 461.8 296 78.0
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 5.4e-128 461.5 296 76.0
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 7.0e-128 461.1 293 76.8
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 9.1e-128 460.7 304 76.0
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 1.6e-127 459.9 300 73.3
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 1.6e-127 459.9 293 75.8
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 2.7e-127 459.1 297 75.4
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 4.5e-127 458.4 302 74.8
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 4.5e-127 458.4 289 76.5
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 4.5e-127 458.4 299 76.6
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 5.9e-127 458.0 307 73.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 5.9e-127 458.0 305 73.8
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 1.0e-126 457.2 291 76.3
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 1.3e-126 456.8 294 76.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.3e-126 456.8 298 75.2
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.3e-126 456.8 294 75.2
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 1.3e-126 456.8 275 79.3
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 1.7e-126 456.4 297 76.4
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.7e-126 456.4 290 76.6
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 2.3e-126 456.1 294 75.5
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 2.3e-126 456.1 294 77.2
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 2.3e-126 456.1 292 76.7
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 2.9e-126 455.7 298 75.2
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 3.8e-126 455.3 296 74.3
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 3.8e-126 455.3 293 74.4
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 3.8e-126 455.3 308 74.7
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 5.0e-126 454.9 308 75.0
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 6.6e-126 454.5 298 74.2
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 6.6e-126 454.5 298 74.2
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 6.6e-126 454.5 291 76.3
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 8.6e-126 454.1 312 72.1
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 8.6e-126 454.1 294 76.2
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.1e-125 453.8 294 75.9
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 1.9e-125 453.0 295 74.6
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 2.5e-125 452.6 298 75.5
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 2.5e-125 452.6 297 76.1
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 2.5e-125 452.6 304 74.3
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 4.2e-125 451.8 289 76.1
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 4.2e-125 451.8 296 73.3
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 5.5e-125 451.4 312 71.8
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 1.2e-124 450.3 298 73.5
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.2e-124 450.3 297 73.4
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 2.1e-124 449.5 293 74.7
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 2.1e-124 449.5 280 77.9
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 2.8e-124 449.1 306 72.2
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 2.8e-124 449.1 294 74.5
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 4.7e-124 448.4 293 74.7
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 6.1e-124 448.0 297 74.1
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 6.1e-124 448.0 297 74.7
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 1.0e-123 447.2 296 74.7
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.0e-123 447.2 276 77.5
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 2.3e-123 446.0 296 74.3
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 8.9e-123 444.1 305 71.5
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.2e-122 443.7 258 82.2
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.5e-122 443.4 299 73.6
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.5e-122 443.4 305 73.4
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 4.4e-122 441.8 283 75.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 4.9e-121 438.3 291 71.8
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 6.3e-121 438.0 283 74.6
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 8.3e-121 437.6 287 74.9
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 1.1e-120 437.2 294 75.5
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 1.4e-120 436.8 302 72.2
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 1.8e-120 436.4 301 70.8
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 2.4e-120 436.0 299 71.6
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 3.2e-120 435.6 302 70.2
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 7.0e-120 434.5 258 79.1
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 7.0e-120 434.5 292 70.9
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.6e-119 433.3 293 73.0
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 5.9e-119 431.4 292 72.6
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 5.9e-119 431.4 280 73.6
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 5.0e-118 428.3 294 70.4
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 2.5e-117 426.0 304 67.8
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 1.2e-116 423.7 287 70.7
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 6.1e-116 421.4 293 70.6
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 4.0e-115 418.7 288 72.2
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 4.4e-114 415.2 287 72.1
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 1.3e-113 413.7 302 68.2
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 1.3e-113 413.7 283 72.1
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 1.1e-112 410.6 308 67.5
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 7.0e-112 407.9 256 74.6
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.2e-111 407.1 296 68.9
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.0e-110 401.7 293 68.3
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 2.0e-106 389.8 235 78.7
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 3.4e-106 389.0 294 63.9
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 4.4e-106 388.7 249 74.7
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 3.7e-105 385.6 219 82.6
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 4.9e-105 385.2 221 81.9
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 2.4e-104 382.9 234 77.8
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 3.5e-103 379.0 263 69.6
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 4.0e-99 365.5 219 79.0
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 4.9e-97 358.6 201 86.6
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.8e-91 340.1 234 70.9
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 2.1e-87 326.6 204 76.0
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 8.7e-86 321.2 269 59.1
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 7.3e-85 318.2 167 91.0
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 2.6e-82 309.7 265 58.5
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 4.4e-82 308.9 189 81.5
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 3.3e-77 292.7 277 56.3
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 9.6e-77 291.2 186 71.5
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 2.8e-76 289.7 291 53.3
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.1e-75 286.2 184 73.4
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 4.2e-72 275.8 157 83.4
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 4.9e-65 252.3 188 61.2
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 1.5e-61 240.7 275 48.7
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 7.4e-61 238.4 251 46.6
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 9.0e-51 204.9 270 42.2
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.3e-49 201.1 205 53.7
CBR_g36941 Chara braunii HOM05D004351 ORTHO05D005196 4.4e-37 159.5 167 50.9
Psat2g075720 Pisum sativum HOM05D000058 ORTHO05D002699 6.3e-28 129.0 68 86.8
Psat2g075680 Pisum sativum HOM05D004351 ORTHO05D005196 1.8e-22 110.9 60 83.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 3.1e-19 100.1 262 28.2
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 2.0e-18 97.4 74 58.1
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 9.8e-13 78.6 81 53.1
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 1.2e-10 71.6 45 75.6
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 3.5e-10 70.1 35 85.7
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.3e-09 68.2 79 53.2
Oeu038112.1 Olea europaea HOM05D004351 ORTHO05D005196 1.3e-09 68.2 45 73.3
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 3.8e-09 66.6 35 80.0
TAR636G0959 Trochodendron aralioides HOM05D004351 ORTHO05D005196 6.6e-09 65.9 58 56.9
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 8.0e-07 58.9 79 48.1


User provided reference genes

Program Settings