Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 2.2e-174 615.5 319 100.0
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 5.8e-106 388.3 322 66.1
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.7e-105 386.7 325 65.5
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.3e-102 376.3 325 64.9
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.9e-102 375.6 322 65.2
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.1e-102 375.2 323 65.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 8.7e-102 374.4 321 65.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.3e-101 372.5 322 66.5
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 5.6e-101 371.7 327 63.9
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.4e-99 367.1 325 64.9
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.4e-99 366.3 240 79.2
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 5.3e-99 365.2 329 61.7
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.2e-98 364.0 324 61.7
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 4.5e-98 362.1 317 63.7
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.8e-98 361.7 239 77.8
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 7.6e-98 361.3 220 81.8
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.4e-96 357.1 304 65.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.4e-96 357.1 240 75.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.5e-96 356.3 220 80.9
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 3.2e-96 355.9 220 80.9
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 3.2e-96 355.9 331 60.4
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.2e-96 355.9 261 72.0
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 5.5e-96 355.1 331 60.1
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 7.1e-96 354.8 263 70.3
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 9.3e-96 354.4 258 73.6
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.1e-95 353.2 245 73.5
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 4.6e-95 352.1 231 77.1
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 7.9e-95 351.3 237 77.6
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.3e-94 350.5 331 60.4
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.3e-94 350.5 264 70.8
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.3e-94 350.5 339 60.2
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.3e-94 349.7 259 71.4
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.3e-94 349.7 259 71.4
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.0e-94 349.4 239 75.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.9e-94 349.0 243 73.7
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 5.1e-94 348.6 241 74.7
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.9e-93 346.7 240 75.0
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 3.3e-93 345.9 220 77.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 7.4e-93 344.7 212 82.5
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.6e-92 343.6 241 75.9
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.8e-92 342.8 353 55.0
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 2.8e-92 342.8 211 81.0
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 4.8e-92 342.0 263 69.2
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.2e-92 341.7 215 78.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 6.2e-92 341.7 231 74.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.4e-91 340.5 215 80.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.4e-91 339.7 208 81.7
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 2.4e-91 339.7 258 69.8
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 3.1e-91 339.3 315 61.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 4.1e-91 339.0 251 70.9
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.1e-91 339.0 249 72.3
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 5.3e-91 338.6 208 82.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.3e-91 338.6 288 63.5
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 5.3e-91 338.6 210 81.4
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-90 337.4 211 79.1
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 2.0e-90 336.7 215 77.2
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 3.4e-90 335.9 280 64.3
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 3.4e-90 335.9 229 74.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 4.5e-90 335.5 311 59.5
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 7.6e-90 334.7 220 75.9
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.3e-89 334.0 235 73.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.9e-88 330.1 212 78.3
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.5e-88 329.7 234 71.4
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 3.2e-88 329.3 212 77.8
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.2e-88 328.9 212 77.8
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 5.5e-88 328.6 212 77.8
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.5e-88 328.6 212 77.8
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 9.3e-88 327.8 212 77.8
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.6e-87 327.0 271 63.5
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.7e-87 326.2 213 76.5
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.5e-87 325.9 320 57.2
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 6.1e-87 325.1 232 74.1
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 7.9e-87 324.7 228 71.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.0e-86 324.3 202 81.7
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.0e-86 324.3 220 73.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.8e-86 323.6 204 80.4
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.3e-86 323.2 204 80.9
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.3e-86 323.2 276 63.4
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 3.0e-86 322.8 202 81.7
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.9e-86 322.4 204 80.4
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 6.7e-86 321.6 267 67.4
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 8.7e-86 321.2 269 63.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.1e-85 320.9 204 79.9
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.1e-85 320.9 204 80.4
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.9e-85 320.1 204 79.4
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.3e-85 319.3 204 79.4
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 5.7e-85 318.5 204 79.4
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.6e-84 317.0 202 79.2
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.2e-84 316.6 204 78.9
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.8e-84 316.2 206 76.2
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.8e-84 316.2 264 64.0
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.8e-84 315.5 227 70.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.3e-84 315.1 268 66.8
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 6.3e-84 315.1 340 55.0
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 8.2e-84 314.7 227 70.0
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.1e-83 314.3 230 70.0
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.1e-83 314.3 229 69.4
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 4.1e-83 312.4 230 68.7
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.1e-83 312.4 263 63.9
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 9.0e-83 311.2 226 69.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.6e-82 309.7 189 81.0
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.1e-80 304.3 202 76.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.1e-80 304.3 280 60.7
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.5e-77 293.1 163 87.7
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 2.9e-73 279.6 208 71.2
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 7.2e-72 275.0 210 68.6
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 8.8e-70 268.1 212 62.7
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.6e-69 266.5 210 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 2.5e-64 250.0 188 64.4
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 6.1e-63 245.4 208 65.9
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.1e-63 245.4 185 64.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 3.7e-60 236.1 141 80.9
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.0e-54 216.5 166 63.9
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.8e-52 209.9 194 54.6
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 4.5e-50 202.6 181 54.7
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.0e-49 201.4 185 55.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.4e-45 186.4 177 49.2
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 2.8e-44 183.3 219 46.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.5e-42 176.4 119 76.5
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 7.3e-40 168.7 141 63.8
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.7e-34 150.2 156 55.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.3e-25 120.6 148 41.2
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 2.8e-23 113.6 65 84.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 8.3e-20 102.1 117 59.0
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.6e-17 92.0 53 83.0
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.1e-14 83.6 89 51.7


User provided reference genes

Program Settings