Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 4.5e-43 177.6 91 100.0
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 7.9e-32 140.2 89 82.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 6.2e-29 130.6 91 76.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 6.9e-28 127.1 91 73.6
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.9e-26 120.9 89 69.7
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 6.5e-26 120.6 91 71.4
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 8.4e-26 120.2 89 69.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.4e-26 120.2 90 67.8
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-25 119.4 82 74.4
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.9e-25 119.0 92 72.8
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.9e-25 119.0 92 72.8
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.6e-24 115.9 89 65.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.6e-24 115.9 91 68.1
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.1e-24 115.5 85 69.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.1e-24 115.5 88 67.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.1e-24 115.5 88 67.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.5e-24 114.8 82 69.5
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 3.5e-24 114.8 91 65.9
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.5e-24 114.8 91 67.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 4.6e-24 114.4 87 67.8
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.0e-23 113.2 89 65.2
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.0e-23 113.2 91 67.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.3e-23 112.8 93 65.6
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.3e-23 112.8 91 63.7
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.8e-23 112.5 84 67.9
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.3e-23 112.1 88 65.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.3e-23 112.1 85 65.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.0e-23 111.7 82 68.3
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 3.0e-23 111.7 89 64.0
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.0e-23 111.7 89 64.0
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 3.9e-23 111.3 80 70.0
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 3.9e-23 111.3 82 68.3
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.1e-23 110.9 85 65.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 5.1e-23 110.9 91 62.6
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 6.7e-23 110.5 88 64.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 6.7e-23 110.5 82 65.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 6.7e-23 110.5 80 68.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 8.7e-23 110.2 89 62.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.7e-23 110.2 91 63.7
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.7e-23 110.2 90 63.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 8.7e-23 110.2 83 68.7
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.1e-22 109.8 90 66.7
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-22 109.8 91 62.6
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.1e-22 109.8 86 62.8
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.1e-22 109.8 86 66.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.5e-22 109.4 80 67.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.9e-22 109.0 86 65.1
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.9e-22 109.0 88 63.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.9e-22 109.0 82 64.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.5e-22 108.6 75 70.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.5e-22 108.6 89 62.9
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.5e-22 108.6 86 64.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.5e-22 108.6 91 63.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.3e-22 108.2 82 63.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.3e-22 108.2 92 66.3
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 4.3e-22 107.8 90 61.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.3e-22 107.8 87 65.5
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 4.3e-22 107.8 82 67.1
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 4.3e-22 107.8 82 64.6
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 7.4e-22 107.1 86 64.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 7.4e-22 107.1 80 65.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.4e-22 107.1 91 61.5
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.3e-21 106.3 89 62.9
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-21 105.5 80 65.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.2e-21 105.5 88 61.4
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.8e-21 105.1 84 63.1
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.8e-21 105.1 86 64.0
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.7e-21 104.8 88 61.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.7e-21 104.8 74 70.3
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-20 103.2 82 62.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-20 103.2 87 58.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.4e-20 102.8 81 61.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.4e-20 102.8 85 65.9
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-20 102.4 80 62.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.3e-20 100.9 136 45.6
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 9.0e-20 100.1 82 57.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 9.0e-20 100.1 85 55.3
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 9.0e-20 100.1 85 55.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 9.0e-20 100.1 85 55.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 9.0e-20 100.1 85 55.3
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 9.0e-20 100.1 90 60.0
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.2e-19 99.8 85 61.2
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.2e-19 99.8 88 62.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.5e-19 99.4 84 59.5
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.0e-19 99.0 90 58.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 2.6e-19 98.6 85 54.1
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.6e-19 98.6 90 51.1
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 3.4e-19 98.2 84 58.3
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.4e-19 98.2 87 57.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 4.5e-19 97.8 80 62.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.9e-19 97.4 88 60.2
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.0e-18 96.7 86 55.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.7e-18 95.9 79 55.7
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.7e-18 95.9 79 55.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.7e-18 95.9 82 56.1
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.7e-18 95.9 82 56.1
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.7e-18 95.9 82 56.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.7e-18 95.9 79 55.7
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.7e-18 95.9 86 57.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.5e-18 94.0 82 54.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-17 93.2 91 53.8
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.1e-17 93.2 82 56.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.3e-13 79.7 91 50.5
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.3e-13 79.7 87 48.3
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.4e-11 71.6 87 44.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 4.5e-11 71.2 93 43.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.0e-10 67.8 90 41.1
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.4e-09 66.2 91 46.2
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.4e-09 63.5 48 68.8
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.2e-08 63.2 76 44.7
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 2.7e-08 62.0 50 64.0
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.3e-07 58.9 61 52.5


User provided reference genes

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