Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 3.1e-270 934.5 459 100.0
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 6.2e-218 760.8 376 99.2
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 5.2e-116 422.2 467 51.0
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.6e-115 419.9 463 51.6
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.2e-113 412.9 467 50.5
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.7e-103 380.6 467 47.8
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 6.4e-98 362.1 464 45.3
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 6.4e-98 362.1 463 45.6
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.1e-93 347.1 468 43.4
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.8e-92 344.0 496 42.1
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.2e-89 332.8 400 49.0
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 3.0e-87 326.6 463 43.2
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 3.0e-87 326.6 463 43.2
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 3.0e-87 326.6 463 45.1
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.9e-86 323.9 504 40.1
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.3e-85 321.2 468 42.3
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 8.2e-85 318.5 469 42.6
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 5.3e-84 315.8 459 42.5
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 9.0e-84 315.1 462 42.9
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 9.0e-84 315.1 500 42.0
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.5e-83 312.8 462 44.6
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.2e-82 310.5 463 41.0
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 4.9e-82 309.3 442 42.5
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 6.5e-82 308.9 467 40.0
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 3.5e-80 303.1 398 44.7
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.3e-78 296.6 462 43.5
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 5.3e-76 289.3 468 38.9
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.2e-75 288.1 462 42.2
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.5e-75 287.7 470 39.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 2.0e-75 287.3 530 35.5
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 5.9e-75 285.8 460 41.5
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.2e-73 279.6 432 39.8
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 7.2e-73 278.9 462 42.9
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 9.3e-73 278.5 467 37.9
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 3.6e-72 276.6 386 43.8
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 3.9e-71 273.1 466 36.9
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.9e-71 273.1 440 40.0
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 8.8e-71 271.9 388 43.3
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.9e-70 270.8 482 38.6
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 2.5e-70 270.4 441 39.5
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 3.3e-70 270.0 476 35.9
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 3.3e-70 270.0 372 42.2
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 4.3e-70 269.6 421 40.9
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 4.3e-70 269.6 389 43.2
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.7e-70 269.2 399 40.6
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 8.2e-69 265.4 412 40.0
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.1e-68 265.0 412 39.8
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.1e-68 265.0 404 41.3
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.4e-68 264.6 403 40.2
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.4e-68 264.6 412 40.3
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.8e-68 264.2 492 38.4
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 9.1e-68 261.9 467 35.8
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.5e-67 261.2 389 42.7
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 1.0e-66 258.5 411 39.4
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.3e-66 258.1 464 36.4
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 2.9e-66 256.9 307 48.9
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.8e-66 256.5 321 44.5
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 8.5e-66 255.4 467 37.3
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.4e-65 254.6 440 38.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.5e-65 253.8 389 41.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 2.5e-65 253.8 444 36.0
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.5e-65 252.7 386 42.2
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.4e-65 251.9 465 36.1
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.1e-64 250.8 463 35.4
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 7.9e-64 248.8 486 38.1
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.0e-63 248.4 468 33.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.0e-63 248.4 409 41.1
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 9.7e-62 241.9 468 34.2
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.7e-61 241.1 416 38.2
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 3.7e-61 240.0 345 42.9
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 4.8e-61 239.6 422 37.4
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 4.1e-60 236.5 430 38.6
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 6.9e-60 235.7 462 36.1
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.2e-59 235.0 377 38.2
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.5e-59 234.6 478 32.2
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 7.7e-59 232.3 376 39.9
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.2e-58 230.7 472 33.9
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.6e-56 224.6 468 33.1
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-56 223.8 477 33.1
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 3.6e-56 223.4 434 36.2
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 4.7e-56 223.0 399 36.3
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.3e-53 214.9 379 36.4
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.8e-52 211.1 389 38.6
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.3e-52 209.5 389 38.3
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 9.1e-52 208.8 361 37.4
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 2.2e-50 204.1 399 35.1
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 3.2e-49 200.3 512 29.9
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 5.5e-49 199.5 441 33.6
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.0e-47 193.4 477 32.1
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 3.1e-44 183.7 290 35.9
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 5.3e-44 183.0 487 32.9
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 9.1e-44 182.2 382 34.3
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 3.5e-43 180.3 264 40.2
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 5.0e-42 176.4 436 31.7
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 6.5e-42 176.0 462 31.0
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 8.5e-42 175.6 308 36.0
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.1e-41 175.3 447 34.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 4.2e-41 173.3 273 38.8
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 3.6e-40 170.2 507 31.4
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 6.1e-40 169.5 280 40.0
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 8.3e-37 159.1 241 37.8
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-35 155.2 183 44.8
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.6e-35 154.8 260 34.6
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 4.5e-35 153.3 299 34.1
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.7e-34 151.4 311 33.4
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 3.8e-34 150.2 321 32.7
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 6.5e-34 149.4 334 32.0
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.2e-33 146.0 218 39.4
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 9.5e-33 145.6 427 29.7
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 9.5e-33 145.6 265 34.7
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.6e-32 144.8 411 31.1
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.3e-31 141.0 387 33.1
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 4.0e-31 140.2 272 32.7
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.2e-30 138.7 358 31.6
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.6e-27 128.3 388 31.2
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.3e-26 124.4 179 39.7
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 5.0e-26 123.2 147 44.9
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 6.6e-26 122.9 276 30.8
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.6e-26 122.9 147 44.9
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 3.3e-25 120.6 178 38.2
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.5e-25 119.0 147 44.9
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 1.6e-24 118.2 179 37.4
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.6e-24 117.1 157 42.7
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.7e-24 116.7 333 31.2
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.0e-23 115.5 225 33.8
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.4e-23 115.2 242 31.4
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 2.3e-23 114.4 353 30.3
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 3.0e-23 114.0 264 30.7
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 4.0e-23 113.6 153 43.1
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 5.2e-23 113.2 180 33.9
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 6.8e-23 112.8 194 35.1
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 6.8e-23 112.8 194 35.1
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 8.9e-23 112.5 282 30.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 4.4e-22 110.2 181 34.8
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 9.8e-22 109.0 259 30.9
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 9.8e-22 109.0 178 34.8
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 9.8e-22 109.0 181 34.3
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 9.8e-22 109.0 181 34.3
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 4.9e-21 106.7 154 41.6
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.2e-20 104.0 95 51.6
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 4.6e-19 100.1 134 41.8
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.9e-17 94.7 180 31.7
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 3.1e-15 87.4 235 26.4
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 5.2e-15 86.7 196 30.1
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.9e-13 80.1 270 28.9
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 9.2e-12 75.9 432 26.9
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 8.6e-10 69.3 111 36.9
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 7.3e-09 66.2 52 53.8
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 3.6e-08 63.9 60 51.7
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 3.6e-08 63.9 84 38.1
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.1e-07 62.4 54 53.7
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 4.0e-07 60.5 80 36.2
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 1.2e-06 58.9 97 32.0
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.0e-06 58.2 74 43.2
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 2.6e-06 57.8 102 32.4
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 3.4e-06 57.4 50 40.0
VMungo0647G1746 Vigna mungo HOM05D004258 ORTHO05D005163 5.8e-06 56.6 99 33.3
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 7.5e-06 56.2 118 27.1
Lalb_Chr10g0101471 Lupinus albus HOM05D004258 ORTHO05D005163 9.9e-06 55.8 183 27.9


User provided reference genes

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