Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g03090 Coffea canephora HOM05D004414 ORTHO05D001824 2.6e-175 618.6 308 100.0
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 1.8e-88 330.1 310 54.2
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 6.5e-86 321.6 312 53.8
Cc11_g01940 Coffea canephora HOM05D004414 ORTHO05D001824 8.7e-83 311.2 176 90.3
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 1.1e-66 257.7 288 47.2
Actinidia19458 Actinidia chinensis HOM05D004414 ORTHO05D001824 3.3e-66 256.1 311 45.0
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 4.1e-64 249.2 294 45.6
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 9.1e-64 248.1 293 45.4
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 1.2e-63 247.7 312 44.9
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 2.0e-63 246.9 285 48.1
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 1.7e-62 243.8 318 43.7
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 2.2e-62 243.4 312 43.9
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 2.5e-61 240.0 320 43.1
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 3.2e-61 239.6 282 45.4
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 7.2e-61 238.4 308 43.5
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 2.1e-60 236.9 249 49.4
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 4.7e-60 235.7 313 44.7
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 5.2e-59 232.3 304 43.8
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 6.7e-59 231.9 293 44.4
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 2.6e-58 229.9 291 44.3
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 7.4e-58 228.4 293 43.3
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.3e-57 227.6 317 42.0
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 1.4e-56 224.2 285 44.9
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 9.1e-56 221.5 279 43.0
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.2e-55 221.1 289 44.6
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 2.6e-55 219.9 281 45.6
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 3.5e-55 219.5 293 42.7
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 3.5e-55 219.5 293 42.7
Nitab4.5_0002103g0040 Nicotiana tabacum HOM05D004414 ORTHO05D001824 3.8e-54 216.1 261 45.6
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 3.8e-54 216.1 279 43.4
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 5.0e-54 215.7 304 40.8
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 5.0e-54 215.7 301 41.5
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 6.5e-54 215.3 251 46.2
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 6.5e-54 215.3 270 43.3
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 6.5e-54 215.3 244 46.7
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.5e-53 214.2 270 43.3
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 3.2e-53 213.0 254 45.7
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 5.5e-53 212.2 288 43.1
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.2e-52 211.1 320 41.2
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 8.0e-52 208.4 318 39.3
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 1.8e-51 207.2 288 42.7
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.8e-51 207.2 308 40.3
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 6.7e-51 205.3 288 42.7
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 8.8e-51 204.9 318 38.7
Peaxi162Scf00309g00418 Petunia axillaris HOM05D004414 ORTHO05D001824 2.0e-50 203.8 279 43.0
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 3.3e-50 203.0 301 41.2
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 3.3e-50 203.0 319 39.2
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 3.3e-50 203.0 320 40.0
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 1.3e-49 201.1 250 45.2
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 1.3e-49 201.1 283 40.3
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 1.7e-49 200.7 283 41.7
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 2.8e-49 199.9 306 42.8
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.8e-48 197.2 295 41.0
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 2.4e-48 196.8 283 39.9
Phvul.011G209100 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 5.9e-47 192.2 266 42.1
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 1.7e-46 190.7 266 41.4
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 2.2e-46 190.3 286 39.9
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 2.9e-46 189.9 271 40.2
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 8.5e-46 188.3 292 42.1
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 1.1e-45 188.0 280 38.9
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 1.5e-45 187.6 279 40.1
Psat5g217560 Pisum sativum HOM05D004414 ORTHO05D001824 7.2e-45 185.3 275 39.3
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 1.5e-42 177.6 320 38.4
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 2.6e-42 176.8 241 42.3
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 9.8e-42 174.9 230 43.0
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 4.8e-41 172.6 262 40.8
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 6.3e-41 172.2 283 37.5
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 1.8e-40 170.6 264 40.2
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 1.8e-40 170.6 286 37.8
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 1.2e-39 167.9 212 45.3
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 4.5e-39 166.0 236 41.9
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 1.0e-38 164.9 186 47.3
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 1.7e-38 164.1 265 39.6
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 2.3e-38 163.7 254 40.9
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 8.6e-38 161.8 242 39.7
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 9.5e-37 158.3 243 39.1
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 1.2e-36 157.9 311 36.3
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 6.1e-36 155.6 184 47.8
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 6.1e-36 155.6 309 37.5
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 8.0e-36 155.2 228 39.9
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 1.8e-35 154.1 242 40.1
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 2.3e-35 153.7 205 46.3
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 1.2e-34 151.4 269 37.5
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.0e-34 150.6 217 40.6
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 3.4e-34 149.8 242 39.7
PSO384G4230 Papaver somniferum HOM05D004414 ORTHO05D001824 3.4e-34 149.8 268 36.2
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 9.8e-34 148.3 227 40.5
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 4.9e-33 146.0 221 40.3
PSO339G3079 Papaver somniferum HOM05D004414 ORTHO05D001824 6.3e-33 145.6 277 35.7
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 6.3e-33 145.6 214 43.9
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 1.6e-31 141.0 234 40.2
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 1.6e-31 141.0 234 40.2
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 2.7e-31 140.2 234 39.7
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 1.0e-30 138.3 224 42.0
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 8.6e-30 135.2 229 37.6
Cpa.g.sc223.17 Carica papaya HOM05D004414 ORTHO05D001824 1.9e-29 134.0 195 40.5
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 1.0e-27 128.3 268 35.4
unitig_749.g13481 Utricularia gibba HOM05D004414 ORTHO05D001824 2.3e-27 127.1 206 41.7
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 3.4e-26 123.2 223 37.2
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 6.4e-25 119.0 289 32.9
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 3.2e-24 116.7 216 41.7
COL.COLO4_09983 Corchorus olitorius HOM05D004414 ORTHO05D001824 9.2e-24 115.2 164 40.9
Ah.10g030650 Amaranthus hybridus HOM05D004414 ORTHO05D001824 2.5e-21 107.1 282 31.9
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 5.6e-21 105.9 206 33.5
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 5.6e-21 105.9 267 29.6
BcaC07g39817 Brassica carinata HOM05D004414 ORTHO05D001824 7.3e-21 105.5 205 39.5
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 1.6e-20 104.4 194 37.6
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 4.7e-20 102.8 255 27.8
Ah.12g062920 Amaranthus hybridus HOM05D004414 ORTHO05D001824 1.1e-19 101.7 221 35.3
HanXRQChr04g0095061 Helianthus annuus HOM05D004414 ORTHO05D001824 1.8e-19 100.9 222 35.6
ECA248G3760 Erigeron canadensis HOM05D004414 ORTHO05D001824 3.1e-19 100.1 202 39.6
vmacro13744 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 8.9e-19 98.6 178 36.5
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 2.0e-18 97.4 223 35.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 4.4e-18 96.3 230 29.6
Zm00001eb341790 Zea mays HOM05D004414 ORTHO05D001824 4.9e-17 92.8 230 26.1
Zm00001eb132420 Zea mays HOM05D004414 ORTHO05D001824 5.4e-16 89.4 212 27.8
Nitab4.5_0008169g0010 Nicotiana tabacum HOM05D004414 ORTHO05D001824 6.0e-15 85.9 101 48.5
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 9.5e-13 78.6 311 25.4
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 3.6e-12 76.6 258 27.5
MBI13_g30710_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 4.7e-12 76.3 73 50.7
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 8.1e-12 75.5 218 28.0
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 3.1e-11 73.6 310 24.2
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 1.2e-10 71.6 289 27.3
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 1.5e-10 71.2 187 29.4
CDE10G1254 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 2.0e-10 70.9 228 26.3
Lj9A354G33 Lonicera japonica HOM05D003662 ORTHO05D001824 2.6e-10 70.5 237 24.1
C04p38010 Brassica napus HOM05D004414 ORTHO05D028135 9.9e-10 68.6 127 36.2
Medtr2g084520 Medicago truncatula HOM05D004414 ORTHO05D001824 9.9e-10 68.6 101 38.6
HPP92_013972 Vanilla planifolia HOM05D004414 ORTHO05D001824 2.2e-09 67.4 242 25.6
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 3.7e-09 66.6 122 38.5
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 3.7e-09 66.6 230 27.4
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 6.4e-09 65.9 221 25.3
BcaC02g09064 Brassica carinata HOM05D004414 ORTHO05D001824 2.4e-08 63.9 113 38.1
Lj5A240T38 Lonicera japonica HOM05D003662 ORTHO05D001824 2.4e-08 63.9 218 25.7
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 4.1e-08 63.2 260 23.5
Gohir.A12G014800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.1e-08 62.4 227 26.9
Lsat_1_v5_gn_5_107161 Lactuca sativa HOM05D003662 ORTHO05D001824 9.2e-08 62.0 218 28.0
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 9.2e-08 62.0 324 24.1
HPP92_012101 Vanilla planifolia HOM05D004414 ORTHO05D001824 9.2e-08 62.0 240 25.0
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 1.2e-07 61.6 312 22.8
Actinidia00263 Actinidia chinensis HOM05D003662 ORTHO05D001824 1.6e-07 61.2 321 24.0
Rhsim11G0136400 Rhododendron simsii HOM05D003662 ORTHO05D001824 1.6e-07 61.2 218 27.1
vmacro01822 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 1.6e-07 61.2 224 29.0
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.1e-07 60.8 230 26.1
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.1e-07 60.8 230 26.1
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 2.7e-07 60.5 262 23.7
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 2.7e-07 60.5 227 24.2
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 4.6e-07 59.7 227 24.2
Nn5g30130 Nelumbo nucifera HOM05D003662 ORTHO05D001824 6.0e-07 59.3 88 38.6
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 6.0e-07 59.3 327 23.5
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 7.8e-07 58.9 232 25.9
GSVIVG01003080001 Vitis vinifera HOM05D003662 ORTHO05D001824 1.0e-06 58.5 252 25.0
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 1.3e-06 58.2 202 27.7
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 1.7e-06 57.8 223 24.2
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 2.3e-06 57.4 237 23.6
ECA240G2352 Erigeron canadensis HOM05D001416 ORTHO05D002549 3.9e-06 56.6 218 25.2
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.9e-06 56.6 280 22.5
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 3.9e-06 56.6 247 23.9
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 5.1e-06 56.2 210 28.1
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 6.6e-06 55.8 307 23.1
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 6.6e-06 55.8 235 25.1
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 6.6e-06 55.8 241 24.5
Atru.chr6.854 Acer truncatum HOM05D003662 ORTHO05D001824 8.6e-06 55.5 98 32.7
Atru.chr6.858 Acer truncatum HOM05D003662 ORTHO05D001824 8.6e-06 55.5 98 32.7


User provided reference genes

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