Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 3199.1 1707 100.0
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1590.5 1798 55.6
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1580.8 1789 56.2
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1575.5 1775 55.5
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1565.8 1697 57.6
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1565.4 1773 56.6
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1535.0 1749 56.8
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1523.8 1747 56.4
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1521.5 1801 55.3
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1518.4 1736 55.8
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1511.1 1784 55.3
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1510.7 1766 54.3
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1505.0 1790 54.8
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1495.7 1780 54.5
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1495.3 1768 53.5
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1494.2 1756 55.2
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1491.1 1793 52.8
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1485.3 1437 64.0
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1484.9 1803 54.0
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1479.5 1799 53.3
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1475.7 1760 54.5
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1460.7 1783 52.8
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1449.1 1800 53.2
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1445.6 1790 52.3
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1444.9 1777 51.9
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1437.2 1816 52.4
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1433.7 1784 52.0
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1432.2 1783 52.2
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1429.8 1775 52.7
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1427.2 1770 53.6
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1426.0 1940 49.6
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1426.0 1786 52.1
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1418.3 1777 51.7
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1411.7 1780 51.5
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1402.9 1785 52.7
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1401.0 1785 52.0
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1397.9 1775 51.0
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1389.0 1780 51.7
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1385.2 1783 51.1
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1383.2 1781 52.1
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1379.8 1786 51.1
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1379.0 1781 51.2
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1378.6 1790 51.1
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1377.1 1790 51.0
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1373.6 1786 50.8
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1365.9 1793 51.9
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1365.9 1786 52.0
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1356.7 1746 51.8
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1356.3 1777 51.6
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1355.9 1409 59.7
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1351.3 1583 55.3
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1347.0 1546 55.3
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1339.3 1723 51.4
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1332.8 1775 50.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1323.9 1786 49.9
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1320.8 1435 58.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1317.0 1611 53.9
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1306.2 1765 50.3
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1305.4 1800 49.6
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1303.5 1785 49.7
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1283.5 1714 50.4
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1282.3 1709 50.9
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1272.3 1232 63.4
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1263.1 1795 48.7
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1260.0 1525 54.2
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1251.5 1234 62.5
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1227.2 1193 62.0
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1191.8 1241 60.4
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1191.0 1291 59.6
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1176.4 1451 52.8
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1169.8 954 70.1
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1152.5 1228 58.6
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1100.9 1278 56.1
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.9e-304 1050.0 954 64.8
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 1.2e-301 1040.8 1747 44.3
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 5.4e-299 1031.9 1022 64.2
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 1.6e-298 1030.4 1303 52.7
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.5e-296 1023.8 1330 51.8
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.1e-286 991.1 820 69.5
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.6e-263 914.1 1480 45.3
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 1.3e-257 894.4 1128 51.0
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.3e-233 814.7 1708 39.4
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 8.7e-233 812.0 1205 47.0
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 5.7e-184 649.8 1097 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 2.9e-175 620.9 861 46.6
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 1.2e-149 535.8 782 46.7
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.3e-147 527.3 536 58.4
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 5.3e-137 493.8 571 54.6
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.9e-134 485.3 807 44.0
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.3e-132 479.2 1110 35.4
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 2.2e-90 339.0 800 37.9
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.1e-86 326.6 707 37.8
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 2.8e-69 268.9 259 56.4
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.7e-63 249.6 236 60.2
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 3.3e-62 245.4 507 36.7
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 4.4e-59 235.0 548 37.2
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 3.0e-55 222.2 216 60.6
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 7.6e-43 181.0 193 56.0
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.9e-41 176.4 182 54.4
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-40 173.7 165 62.4
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.3e-39 169.5 171 56.7
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-34 151.8 271 38.0
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.4e-33 150.2 1301 22.5
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 7.8e-32 144.4 263 39.9
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.3e-26 127.1 155 49.0
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.9e-26 125.9 152 53.9
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.7e-23 116.7 409 25.4
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 4.8e-21 108.6 284 27.8
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.8e-20 106.7 213 40.4
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-20 106.3 111 54.1
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 1.3e-18 100.5 111 54.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.1e-15 88.6 63 69.8
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 2.1e-13 83.2 57 66.7
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-11 77.0 70 48.6
unitig_37.g12720 Utricularia gibba HOM05D001674 ORTHO05D008599 1.0e-10 74.3 256 28.9
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.3e-09 67.8 183 38.8
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 7.9e-08 64.7 143 41.3
Nn1g01396 Nelumbo nucifera HOM05D001674 ORTHO05D008599 8.7e-07 61.2 52 65.4


User provided reference genes

Program Settings