Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 0.0e+00 1313.1 633 100.0
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.1e-300 1034.6 636 81.3
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.7e-153 545.4 643 47.1
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-133 480.7 550 46.2
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.5e-132 476.9 649 42.2
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.5e-132 475.7 661 41.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.2e-130 469.2 671 40.7
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.2e-128 463.8 661 40.4
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 3.7e-128 463.0 636 42.1
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.7e-126 455.3 650 39.7
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.2e-123 448.0 643 41.1
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.7e-123 446.8 643 41.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.0e-123 445.3 665 40.2
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.8e-122 441.8 639 40.5
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.0e-121 440.7 640 40.6
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.7e-121 438.3 631 41.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.3e-120 438.0 640 40.3
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.2e-120 437.2 664 40.5
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.8e-120 436.8 649 39.8
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.8e-120 436.8 649 39.8
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.1e-119 433.0 640 40.6
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 5.3e-119 432.6 403 60.5
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 5.3e-119 432.6 658 39.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.8e-117 426.4 675 38.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 6.5e-117 425.6 649 39.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.2e-116 422.2 676 37.7
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.7e-115 420.2 576 42.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.3e-114 417.2 649 39.0
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.3e-114 417.2 641 37.8
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.5e-113 414.5 644 38.4
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.0e-113 414.1 660 38.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 5.4e-111 406.0 655 37.4
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.4e-111 406.0 661 37.5
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.0e-111 405.6 633 38.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 7.0e-111 405.6 653 37.2
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.7e-110 403.7 661 36.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.5e-110 402.9 619 38.1
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 5.0e-109 399.4 660 36.4
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.5e-108 397.1 655 37.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.5e-108 396.0 674 37.7
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.7e-107 392.9 662 37.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.0e-106 391.7 656 37.5
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 3.4e-105 386.7 658 36.8
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 8.3e-104 382.1 662 37.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-103 381.7 652 36.0
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 7.0e-103 379.0 669 36.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 7.0e-103 379.0 648 36.6
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.2e-102 378.3 670 36.0
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.7e-102 377.1 540 40.2
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 5.9e-102 375.9 648 36.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-101 375.2 694 35.2
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-101 375.2 625 37.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-101 375.2 654 36.5
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.3e-101 374.8 658 36.2
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.3e-101 374.0 686 35.6
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 8.6e-101 372.1 654 36.4
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 8.6e-101 372.1 653 37.2
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.3e-100 369.0 670 35.7
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 6.8e-98 362.5 659 35.4
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 8.9e-98 362.1 683 34.6
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-97 361.7 666 35.9
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 9.8e-97 358.6 662 36.7
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.9e-96 357.1 604 36.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 2.9e-96 357.1 659 34.9
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.9e-96 356.3 622 36.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 6.4e-96 355.9 654 35.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 8.3e-96 355.5 663 35.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.8e-95 354.4 668 34.9
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.2e-95 353.6 656 34.5
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.2e-95 353.6 656 34.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.2e-94 351.7 603 35.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.7e-94 350.5 602 35.9
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.5e-94 350.1 653 34.2
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.9e-93 346.7 646 33.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 6.6e-93 345.9 673 34.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.6e-93 345.9 618 36.4
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 8.6e-93 345.5 629 35.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 7.3e-92 342.4 663 35.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.8e-91 340.5 648 34.9
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 6.2e-91 339.3 655 34.4
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.8e-90 337.8 606 35.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 2.3e-90 337.4 674 34.3
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 3.1e-90 337.0 662 34.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.2e-90 336.3 743 32.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 6.8e-90 335.9 674 34.4
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 8.9e-90 335.5 629 35.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.9e-90 335.5 631 34.9
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.4e-89 333.2 653 35.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-89 332.8 662 35.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 7.5e-89 332.4 620 35.3
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 9.8e-89 332.0 568 37.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.7e-88 331.3 641 33.9
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 8.3e-88 328.9 649 33.7
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 8.3e-88 328.9 649 33.7
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.1e-87 328.6 677 34.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.9e-87 327.8 655 33.4
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 6.0e-86 322.8 718 32.9
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.3e-85 321.6 720 32.8
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-85 321.6 600 35.7
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 5.0e-85 319.7 628 34.4
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 8.6e-85 318.9 667 33.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.9e-84 317.8 651 33.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.9e-84 317.8 633 33.8
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.9e-84 317.8 659 33.1
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.9e-84 317.8 659 33.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 3.3e-84 317.0 638 33.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 2.0e-81 307.8 653 32.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.3e-80 302.4 637 33.4
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 9.2e-79 298.9 637 33.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.3e-77 294.3 676 32.1
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.2e-72 277.7 290 46.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.5e-68 265.0 341 43.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.3e-68 263.8 526 34.4
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.1e-66 257.3 459 35.5
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 2.9e-64 250.8 460 35.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.2e-62 245.4 519 31.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 5.6e-60 236.5 530 32.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.9e-42 176.4 436 30.7
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.5e-41 173.7 421 31.6
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.1e-36 159.1 565 25.5
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.5e-36 157.9 425 30.1
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.3e-34 150.2 237 39.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.5e-33 148.7 367 30.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-32 145.6 550 27.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-31 142.5 196 39.3
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.6e-30 138.7 264 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.0e-29 136.0 681 22.0
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 5.1e-29 133.7 342 32.2
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 8.7e-29 132.9 118 48.3
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 4.8e-27 127.1 198 42.4
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.8e-26 125.2 204 35.8
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.2e-25 122.5 161 35.4
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 2.2e-24 118.2 442 24.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.5e-23 114.8 303 29.4
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 7.9e-22 109.8 92 55.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.8e-21 108.6 341 29.0
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 5.7e-20 103.6 54 85.2
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.6e-17 94.7 114 42.1
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.1e-12 79.3 158 34.8
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 2.0e-12 78.6 118 36.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.4e-10 72.4 239 27.2
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.5e-09 67.4 49 59.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 3.8e-08 64.3 48 56.2
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.5e-08 63.5 68 38.2
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 3.2e-07 61.2 96 36.5
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.4e-07 59.7 34 64.7
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 1.2e-06 59.3 59 50.8
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.7e-06 57.4 32 65.6


User provided reference genes

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