Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 2.4e-209 731.9 360 100.0
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 4.0e-63 246.1 411 40.9
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 2.3e-50 203.8 322 43.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 3.3e-49 199.9 347 40.1
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 1.6e-48 197.6 347 40.1
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 2.1e-48 197.2 328 39.9
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.1e-48 197.2 347 39.8
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 3.7e-48 196.4 325 40.6
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 4.8e-48 196.1 344 39.2
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 6.3e-48 195.7 345 40.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.4e-47 194.5 343 38.5
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 3.1e-47 193.4 348 39.7
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 5.3e-47 192.6 347 38.9
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 5.3e-47 192.6 404 34.2
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 5.3e-47 192.6 347 40.1
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 1.5e-46 191.0 347 38.6
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 2.6e-46 190.3 347 39.2
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 3.4e-46 189.9 348 37.9
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 4.5e-46 189.5 347 39.2
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 4.5e-46 189.5 348 38.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 5.9e-46 189.1 347 40.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 7.6e-46 188.7 347 38.9
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 7.6e-46 188.7 356 39.3
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 7.6e-46 188.7 349 39.0
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 7.6e-46 188.7 354 37.3
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.2e-45 187.2 348 38.2
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.2e-45 187.2 348 37.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 2.9e-45 186.8 355 38.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 3.8e-45 186.4 343 38.2
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 3.8e-45 186.4 343 38.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 3.8e-45 186.4 348 37.1
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.0e-45 186.0 343 38.2
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 6.5e-45 185.7 349 39.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 6.5e-45 185.7 350 38.0
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 6.5e-45 185.7 343 38.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 6.5e-45 185.7 343 38.2
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 6.5e-45 185.7 337 39.5
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 6.5e-45 185.7 337 39.5
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 6.5e-45 185.7 347 39.5
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 8.4e-45 185.3 343 38.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 8.4e-45 185.3 347 37.8
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 1.4e-44 184.5 350 37.4
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 1.9e-44 184.1 342 38.6
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 1.9e-44 184.1 344 39.8
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 2.5e-44 183.7 347 38.6
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.5e-44 183.7 343 37.9
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 2.5e-44 183.7 347 38.0
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 3.2e-44 183.3 347 39.2
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 3.2e-44 183.3 334 39.2
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 3.2e-44 183.3 343 39.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 3.2e-44 183.3 360 38.1
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 3.2e-44 183.3 351 39.3
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 4.2e-44 183.0 347 39.2
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 9.3e-44 181.8 343 37.6
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.2e-43 181.4 368 36.7
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 1.6e-43 181.0 347 38.9
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 2.1e-43 180.6 345 38.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 3.5e-43 179.9 343 37.6
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 4.6e-43 179.5 343 37.0
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 6.1e-43 179.1 347 37.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 1.8e-42 177.6 349 38.1
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 2.3e-42 177.2 349 38.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 2.3e-42 177.2 349 38.4
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 3.0e-42 176.8 344 36.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 3.0e-42 176.8 354 37.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 3.9e-42 176.4 342 40.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 5.1e-42 176.0 382 33.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 6.7e-42 175.6 357 38.1
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 8.7e-42 175.3 349 36.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 1.1e-41 174.9 351 35.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.1e-41 174.9 345 37.4
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 1.9e-41 174.1 343 37.9
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 3.3e-41 173.3 346 38.7
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 3.3e-41 173.3 349 36.7
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 4.3e-41 172.9 344 38.1
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 5.7e-41 172.6 349 36.4
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 5.7e-41 172.6 349 36.4
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 9.7e-41 171.8 349 36.1
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 9.7e-41 171.8 394 34.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 1.3e-40 171.4 342 37.4
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.3e-40 171.4 343 37.6
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 1.6e-40 171.0 351 37.6
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.6e-40 171.0 338 36.7
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 1.6e-40 171.0 357 35.3
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 2.8e-40 170.2 410 33.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 3.7e-40 169.9 349 36.1
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 3.7e-40 169.9 345 36.5
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 4.8e-40 169.5 349 37.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 4.8e-40 169.5 349 35.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 4.8e-40 169.5 349 36.1
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 4.8e-40 169.5 345 36.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 4.8e-40 169.5 333 39.3
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 6.3e-40 169.1 349 37.8
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 6.3e-40 169.1 349 36.1
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 6.3e-40 169.1 349 36.1
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 6.9e-39 165.6 343 36.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 2.9e-37 160.2 295 40.7
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 6.5e-37 159.1 325 35.4
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 1.2e-35 154.8 347 35.4
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.1e-35 152.5 325 36.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 3.0e-34 150.2 324 34.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 5.1e-34 149.4 374 33.7
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.0e-33 147.5 299 34.8
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 3.7e-32 143.3 322 34.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 1.4e-31 141.4 362 32.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.0e-29 135.2 331 33.8
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.7e-29 134.4 357 31.1
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.9e-28 131.0 329 35.3
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.5e-28 129.4 378 29.6
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 9.4e-28 128.6 363 32.0
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.0e-26 125.2 271 36.5
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.8e-26 124.4 294 34.4
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.4e-23 114.8 355 29.0
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.2e-20 103.6 112 50.9
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 2.1e-19 100.9 103 52.4
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 4.7e-19 99.8 233 33.5
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.7e-17 92.8 102 48.0
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 5.3e-15 86.3 98 42.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 4.2e-12 76.6 238 31.9


User provided reference genes

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