Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 4.6e-153 544.7 303 100.0
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.8e-118 429.1 304 81.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.4e-117 426.0 307 80.5
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.8e-110 402.5 338 72.5
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.0e-104 382.5 344 69.2
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-100 370.2 334 68.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 9.5e-90 334.3 259 77.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.4e-87 325.9 259 76.1
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 7.5e-87 324.7 278 71.9
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.9e-86 322.0 270 73.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.4e-85 319.7 235 80.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.5e-82 310.5 343 55.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 7.3e-82 308.1 344 55.8
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.4e-80 303.9 343 56.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.3e-80 303.1 343 56.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.0e-80 302.4 343 55.1
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.5e-79 300.4 343 55.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 9.8e-79 297.7 343 54.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.3e-78 297.4 343 54.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.7e-78 297.0 343 54.8
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.4e-77 292.0 343 54.2
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.6e-76 290.4 343 53.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-76 290.4 343 53.9
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.0e-76 290.0 343 53.6
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.7e-76 289.7 310 57.1
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.7e-76 289.7 332 54.8
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.5e-76 289.3 343 53.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.5e-76 289.3 343 53.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-76 288.9 343 53.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.0e-76 288.5 343 53.1
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.0e-76 288.5 344 53.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 7.8e-76 288.1 343 53.1
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.0e-75 287.7 343 53.6
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.3e-75 287.3 343 53.9
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.3e-75 287.3 343 53.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.3e-75 287.3 343 52.2
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.3e-75 286.6 343 52.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 2.3e-75 286.6 343 52.2
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.3e-75 286.6 343 51.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.0e-75 286.2 337 54.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.0e-75 285.4 340 53.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 5.0e-75 285.4 343 52.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.5e-74 283.9 337 53.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.9e-74 283.5 343 51.9
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 5.6e-74 282.0 337 53.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.3e-74 281.6 339 53.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-73 280.8 343 51.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.6e-73 280.4 362 51.1
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.6e-73 279.3 214 76.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 3.6e-73 279.3 343 51.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.6e-73 279.3 343 51.6
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.7e-73 278.9 343 51.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.1e-72 277.7 343 52.2
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-72 277.3 343 50.1
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.1e-72 276.2 310 55.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.1e-72 276.2 335 52.8
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.0e-72 275.8 343 51.6
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.2e-72 275.4 317 56.2
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 5.2e-72 275.4 343 51.3
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.2e-71 274.2 343 50.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.5e-71 273.9 339 51.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.5e-71 273.9 343 50.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.6e-71 273.1 311 53.1
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-70 270.8 261 60.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.7e-70 270.4 334 50.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.9e-70 268.9 338 50.6
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.4e-69 267.3 345 49.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.1e-69 265.8 343 49.3
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 7.1e-69 265.0 341 51.0
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.6e-68 263.8 287 54.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-67 260.8 320 50.0
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.3e-67 260.8 320 50.0
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-67 260.4 320 49.7
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-67 259.6 306 52.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.0e-67 259.6 332 49.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-66 257.3 320 49.1
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.5e-66 257.3 345 48.1
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 4.3e-66 255.8 343 47.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 9.5e-66 254.6 326 50.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.6e-65 253.8 343 48.7
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.6e-65 253.8 343 48.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.1e-65 253.4 340 48.5
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.7e-65 252.3 330 49.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 8.1e-65 251.5 344 46.2
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-64 251.1 248 62.9
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-64 251.1 343 48.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.1e-64 249.6 286 53.5
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 5.2e-64 248.8 343 48.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 8.9e-64 248.1 263 55.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-63 247.3 337 47.5
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-63 247.3 334 47.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-63 247.3 326 48.8
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.6e-63 246.5 343 47.5
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.8e-63 245.4 245 56.7
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 7.6e-63 245.0 245 56.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.9e-63 244.6 336 47.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 9.9e-63 244.6 245 56.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.8e-62 242.7 300 50.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 8.4e-62 241.5 307 50.8
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.4e-61 240.7 341 47.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.9e-61 240.4 339 47.8
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 3.2e-61 239.6 286 50.7
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.4e-61 238.8 208 63.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 7.1e-61 238.4 314 49.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.7e-60 236.5 286 51.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.3e-59 233.4 312 50.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 8.7e-59 231.5 286 52.1
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.5e-58 229.9 343 45.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.3e-58 229.2 328 47.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.1e-57 226.9 342 45.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.7e-57 225.7 343 44.9
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.1e-57 224.9 343 46.6
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.1e-57 224.9 343 46.6
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-56 224.6 343 45.5
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.4e-56 223.4 342 45.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.4e-56 223.4 314 49.0
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.5e-55 220.7 343 44.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.4e-55 219.5 339 43.7
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.7e-54 217.2 343 44.3
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.9e-54 216.5 291 49.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.4e-54 214.9 340 45.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.4e-53 213.4 285 48.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.4e-53 212.2 343 44.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.5e-52 209.5 343 43.1
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 7.8e-52 208.4 345 43.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-51 205.3 134 84.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 8.7e-51 204.9 312 46.2
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.5e-50 203.4 256 50.4
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.3e-50 203.0 340 41.5
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.1e-49 200.3 342 43.0
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.8e-49 199.9 293 45.1
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.8e-49 199.1 392 38.8
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.1e-48 198.0 343 41.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.3e-48 195.7 280 44.3
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.0e-47 193.7 289 46.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.5e-47 192.6 280 43.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 7.6e-47 191.8 288 46.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-46 191.0 291 42.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.9e-46 189.9 313 42.8
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.4e-45 187.6 315 41.6
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 4.2e-45 186.0 203 55.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-44 184.5 299 42.1
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.6e-44 184.1 343 39.7
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 4.6e-44 182.6 343 39.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 7.9e-44 181.8 269 42.8
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.3e-43 181.0 309 42.1
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.3e-43 180.3 333 40.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.1e-43 179.1 286 42.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-42 177.9 343 38.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.6e-42 175.6 146 67.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.5e-36 156.4 292 39.0
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.5e-34 151.0 168 56.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 7.4e-34 148.7 185 48.1
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.3e-33 147.9 308 38.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.8e-33 146.7 354 33.6
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.1e-32 144.8 229 43.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.0e-32 142.9 267 40.1
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.8e-30 136.3 343 35.9
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.1e-28 130.6 259 40.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.8e-24 117.5 262 36.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.4e-24 117.1 308 32.5
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-23 114.4 245 37.6
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.0e-23 114.0 263 36.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 3.8e-22 109.8 312 29.8
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 3.8e-22 109.8 144 48.6
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.7e-19 99.0 57 98.2
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 8.8e-19 98.6 256 34.0
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 8.8e-19 98.6 256 34.0
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.8e-17 93.6 127 52.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.4e-16 91.3 343 29.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.9e-13 80.9 54 79.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.2e-13 80.1 91 56.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 3.6e-12 76.6 185 32.4
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.1e-10 71.6 263 30.0
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 4.5e-07 59.7 125 40.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 5.9e-07 59.3 131 40.5


User provided reference genes

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