Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.0e-248 861.7 529 100.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.1e-226 790.0 528 93.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.8e-198 694.9 528 82.0
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 4.1e-197 691.8 529 81.5
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.9e-196 688.0 526 83.5
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 5.0e-195 684.9 529 80.0
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 4.2e-194 681.8 526 81.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 7.2e-194 681.0 532 80.8
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.4e-192 676.8 527 81.2
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 5.2e-192 674.9 526 80.8
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-189 666.8 530 79.4
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.8e-189 666.4 541 76.5
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.9e-187 659.1 530 79.4
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 5.0e-187 658.3 531 79.5
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 4.7e-185 651.7 526 77.2
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 7.5e-175 617.8 542 72.0
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 6.2e-161 571.6 455 77.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.2e-135 487.6 513 64.5
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.5e-135 487.3 535 59.6
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.9e-134 483.0 556 58.3
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 4.9e-134 482.3 546 59.9
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.1e-133 478.4 567 57.1
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 7.1e-133 478.4 541 60.1
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 2.1e-132 476.9 550 60.5
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 3.5e-132 476.1 558 59.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.0e-132 475.3 547 58.0
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.8e-132 474.9 540 59.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 7.8e-132 474.9 555 58.6
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.3e-131 473.4 537 53.1
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 5.1e-131 472.2 527 60.3
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 7.3e-130 468.4 541 60.8
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.6e-129 467.2 539 57.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.1e-129 466.8 529 58.4
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 3.6e-129 466.1 543 58.7
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.4e-128 464.2 549 58.7
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.4e-128 463.4 539 58.4
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.5e-127 460.7 548 60.0
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.0e-127 460.3 542 60.3
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.6e-127 459.9 555 56.2
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 4.5e-127 459.1 524 59.7
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 5.8e-127 458.8 549 59.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.8e-127 458.8 543 60.0
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 7.6e-127 458.4 572 55.9
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.9e-126 456.4 529 51.4
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.9e-125 453.8 540 60.7
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 3.2e-125 453.0 524 60.9
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.2e-125 452.6 546 60.1
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.2e-124 451.1 539 59.9
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 4.6e-124 449.1 579 56.6
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.9e-124 448.4 537 57.7
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.3e-123 446.8 565 56.1
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 8.7e-123 444.9 550 56.5
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.9e-122 443.7 578 54.0
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.5e-122 443.4 554 57.2
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.5e-122 443.4 531 57.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 5.6e-122 442.2 555 56.9
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.1e-121 440.3 555 56.6
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.7e-121 439.5 565 58.4
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 4.8e-121 439.1 538 57.4
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.4e-120 437.6 532 55.6
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 4.0e-120 436.0 541 58.6
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 5.3e-120 435.6 548 56.8
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 3.4e-119 433.0 545 56.5
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.3e-118 431.0 566 55.3
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 4.9e-118 429.1 528 50.8
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.2e-117 426.4 521 55.7
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 9.3e-117 424.9 546 57.3
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 1.6e-116 424.1 541 54.2
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 4.6e-116 422.5 563 52.2
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.3e-115 421.0 562 52.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.8e-115 420.6 542 55.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 6.7e-115 418.7 547 53.9
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 4.3e-114 416.0 577 51.6
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 7.4e-114 415.2 533 54.2
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.1e-113 413.7 573 53.6
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 6.2e-113 412.1 538 55.6
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.1e-112 411.4 547 55.2
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.8e-112 410.6 579 52.8
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.8e-112 410.6 544 54.8
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.3e-112 409.1 523 55.3
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.5e-111 407.5 543 55.6
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.0e-111 407.1 611 49.6
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.9e-110 403.3 542 48.9
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 3.8e-110 402.9 545 50.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 6.5e-110 402.1 530 54.2
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.4e-110 401.7 526 54.2
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-109 400.6 520 53.8
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 2.5e-109 400.2 614 51.5
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.2e-109 399.4 519 55.7
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 4.2e-109 399.4 526 47.1
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.7e-108 396.7 534 53.6
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.5e-108 396.4 523 57.2
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 7.9e-108 395.2 554 53.4
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.3e-107 394.4 543 49.2
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 6.7e-107 392.1 564 50.9
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 7.4e-106 388.7 567 52.2
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.2e-105 385.2 496 48.4
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.1e-104 384.8 519 45.9
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.4e-104 384.4 532 46.2
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 9.0e-104 381.7 541 51.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.2e-103 381.3 576 52.6
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.2e-100 371.3 528 45.8
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 7.9e-100 368.6 569 50.8
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.9e-98 364.0 540 51.3
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 8.2e-97 358.6 537 45.4
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.5e-95 354.4 528 50.6
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 9.4e-93 345.1 501 53.3
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 3.9e-83 313.2 587 46.7
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.7e-83 312.4 299 59.2
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.5e-77 294.7 520 42.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.9e-77 294.3 554 45.1
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 8.0e-76 288.9 472 47.5
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.0e-75 288.5 347 52.4
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 4.4e-74 283.1 473 43.3
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.4e-72 277.3 512 37.1
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 4.2e-69 266.5 279 61.3
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.8e-67 261.2 361 55.1
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 8.8e-67 258.8 542 35.2
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.4e-66 256.9 525 41.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 5.7e-58 229.6 277 57.8
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.3e-54 218.4 198 60.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 6.1e-52 209.5 241 50.2
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.4e-51 208.4 166 65.7
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.5e-50 204.9 214 57.0
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-49 200.3 176 80.7
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-48 198.7 361 51.5
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.4e-48 198.4 340 47.4
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.6e-47 194.9 245 45.7
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-46 191.8 191 59.7
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-46 191.8 191 59.7
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 6.8e-43 179.5 116 75.9
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 7.5e-34 149.4 254 36.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 7.6e-26 122.9 103 63.1
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-24 119.0 142 51.4
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.2e-18 99.0 250 30.8
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.4e-18 97.1 62 75.8
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.8e-17 94.0 154 40.3
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 7.8e-15 86.3 102 52.9
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 1.3e-14 85.5 63 68.3
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 6.6e-14 83.2 48 85.4
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.1e-11 75.9 85 50.6
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 1.4e-11 75.5 46 80.4
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.5e-10 72.0 69 58.0
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 2.6e-10 71.2 73 52.1
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 5.8e-10 70.1 79 46.8
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 7.6e-10 69.7 74 54.1
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.4e-09 66.2 69 58.0
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.2e-08 63.9 37 75.7
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 9.3e-08 62.8 67 50.7


User provided reference genes

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