Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 2.5e-186 655.2 309 100.0
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 9.2e-157 557.0 295 87.8
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 3.9e-155 551.6 296 87.5
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 9.2e-149 530.4 289 85.1
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 1.5e-146 523.1 289 84.8
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 7.3e-146 520.8 289 84.8
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 7.3e-146 520.8 289 84.8
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.4e-133 479.9 289 77.5
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 6.0e-132 474.6 289 79.9
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 1.5e-114 416.8 223 87.4
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 5.3e-112 408.3 287 65.2
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 3.4e-111 405.6 217 86.2
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 1.9e-109 399.8 287 64.1
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 2.7e-108 396.0 287 64.5
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 5.1e-107 391.7 296 62.2
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 6.7e-107 391.3 287 62.0
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 2.5e-106 389.4 299 60.2
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 2.5e-106 389.4 302 61.3
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 5.6e-106 388.3 291 60.5
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 2.1e-105 386.3 294 61.9
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 2.8e-105 386.0 290 63.8
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 1.1e-104 384.0 290 63.8
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 5.3e-104 381.7 288 60.4
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 1.5e-103 380.2 293 62.8
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 4.5e-103 378.6 289 58.1
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 4.5e-103 378.6 287 61.7
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.9e-102 375.9 299 60.2
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 8.4e-102 374.4 291 58.8
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 5.5e-101 371.7 289 60.2
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 9.3e-101 370.9 284 60.6
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 1.2e-100 370.5 288 58.3
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 1.2e-100 370.5 288 58.3
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 2.7e-100 369.4 289 59.2
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 3.5e-100 369.0 307 59.3
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 3.5e-100 369.0 297 58.6
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.0e-99 367.5 291 59.8
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 2.5e-98 362.8 281 57.3
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 3.3e-98 362.5 306 57.5
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 2.8e-97 359.4 281 60.1
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 3.7e-97 359.0 301 56.5
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 1.4e-96 357.1 289 57.4
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 4.1e-96 355.5 290 57.2
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 2.6e-95 352.8 276 59.1
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 7.6e-95 351.3 293 57.3
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 8.4e-94 347.8 289 57.1
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 9.3e-93 344.4 291 56.0
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 4.6e-92 342.0 287 55.7
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 3.3e-90 335.9 283 58.3
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 5.7e-90 335.1 262 59.2
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 5.7e-90 335.1 276 56.9
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 9.7e-90 334.3 239 63.2
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 2.2e-89 333.2 245 60.4
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 3.7e-89 332.4 280 56.1
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 3.1e-88 329.3 290 52.4
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 3.8e-86 322.4 285 54.4
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 3.2e-85 319.3 287 50.2
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 4.6e-84 315.5 238 59.7
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 1.0e-83 314.3 281 53.0
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 5.1e-83 312.0 276 54.3
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 7.4e-82 308.1 279 54.8
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 3.8e-78 295.8 326 47.9
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 2.9e-70 269.6 246 52.4
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 1.9e-69 266.9 298 47.7
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 4.0e-67 259.2 277 46.2
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 1.1e-66 257.7 224 55.8
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 2.0e-63 246.9 233 54.5
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 1.3e-62 244.2 299 45.5
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 8.3e-57 224.9 367 36.8
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 1.1e-56 224.6 198 52.5
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 1.6e-55 220.7 276 39.9
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 1.6e-55 220.7 214 51.4
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 5.5e-53 212.2 288 38.5
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 7.5e-50 201.8 278 36.3
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 3.6e-44 183.0 230 42.6
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 1.2e-36 157.9 131 59.5
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 2.4e-32 143.7 110 60.0
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 1.2e-31 141.4 107 61.7
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 1.6e-28 131.0 64 90.6
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 6.2e-28 129.0 372 25.8
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 1.9e-21 107.5 185 37.8
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 1.6e-12 77.8 60 56.7


User provided reference genes

Program Settings