Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 2.0e-141 505.8 256 100.0
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 8.2e-135 483.8 256 95.3
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 1.8e-134 482.6 256 95.7
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 3.0e-129 465.3 256 91.4
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.5e-128 463.0 256 91.8
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 4.3e-128 461.5 256 91.4
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 7.4e-128 460.7 256 93.0
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.2e-127 459.1 256 91.4
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.2e-127 459.1 256 91.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 2.2e-127 459.1 256 91.4
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 3.4e-125 451.8 255 90.2
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 9.7e-120 433.7 256 87.1
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.3e-119 433.3 251 88.0
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.1e-118 430.3 256 85.5
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.9e-115 419.5 240 89.6
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 6.7e-113 411.0 260 80.8
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 1.5e-112 409.8 257 80.9
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 3.5e-109 398.7 256 78.9
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.9e-108 395.6 254 75.6
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.8e-108 395.2 255 76.9
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 8.5e-108 394.0 254 75.2
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.2e-106 390.2 254 76.0
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.4e-105 386.7 254 76.4
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.8e-105 386.3 256 77.0
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.6e-104 382.5 254 76.0
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 3.3e-104 382.1 254 74.0
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.3e-104 382.1 256 74.6
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 7.5e-104 380.9 256 74.6
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 2.8e-103 379.0 255 74.5
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 6.3e-103 377.9 252 75.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 6.3e-103 377.9 252 75.0
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 8.2e-103 377.5 254 76.0
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.1e-102 377.1 256 73.4
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.8e-102 376.3 255 74.5
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 1.8e-102 376.3 254 74.4
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 2.4e-102 375.9 259 73.4
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 7.0e-102 374.4 254 73.2
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 1.2e-101 373.6 253 74.7
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 2.7e-101 372.5 254 73.6
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 7.7e-101 370.9 255 72.5
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.0e-100 370.5 255 75.7
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.0e-100 370.5 256 73.4
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 5.0e-100 368.2 258 70.9
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 6.5e-100 367.9 252 75.0
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 6.5e-100 367.9 254 71.7
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 8.5e-100 367.5 254 72.8
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 8.5e-100 367.5 256 73.4
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 9.4e-99 364.0 255 72.9
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.2e-98 363.6 205 89.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.2e-98 363.6 257 73.5
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 8.0e-98 360.9 253 72.3
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 8.0e-98 360.9 256 71.1
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 1.4e-97 360.1 254 71.3
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.3e-97 359.4 256 70.3
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 2.3e-97 359.4 256 73.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.3e-97 359.4 256 71.1
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 4.0e-97 358.6 272 69.5
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 6.8e-97 357.8 253 70.0
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 8.8e-97 357.5 252 72.2
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.0e-96 356.3 255 71.4
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 3.4e-96 355.5 253 71.1
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 4.4e-96 355.1 258 70.9
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.5e-96 354.4 270 70.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 9.8e-96 354.0 253 70.8
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.3e-95 353.6 256 70.3
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.3e-95 353.6 257 72.4
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.3e-95 353.6 256 69.9
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.8e-95 352.4 255 69.8
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.7e-95 352.1 256 69.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 3.7e-95 352.1 266 69.5
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 3.7e-95 352.1 255 69.4
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 6.3e-95 351.3 256 68.8
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 1.4e-94 350.1 254 69.7
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.8e-94 349.7 252 70.2
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.4e-94 349.4 256 70.7
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 2.4e-94 349.4 256 68.8
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.1e-94 349.0 256 69.1
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 3.1e-94 349.0 256 69.1
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.2e-93 347.1 256 71.1
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.6e-93 346.7 259 71.0
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 2.7e-93 345.9 257 68.1
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 7.7e-93 344.4 304 61.8
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 7.7e-93 344.4 256 69.1
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.3e-92 343.6 241 69.7
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.3e-92 343.6 241 70.1
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 6.6e-92 341.3 258 67.8
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 1.5e-91 340.1 254 66.5
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 4.7e-90 335.1 279 63.4
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 1.4e-89 333.6 254 67.3
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.3e-89 332.8 264 65.2
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.5e-88 330.1 260 63.8
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.4e-88 328.9 241 70.5
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 7.5e-88 327.8 260 63.8
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 1.7e-87 326.6 256 62.5
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.8e-86 323.2 256 66.4
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 9.2e-86 320.9 236 70.3
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.6e-85 320.1 257 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 5.6e-83 311.6 256 61.3
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.6e-82 310.1 256 68.4
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 2.1e-82 309.7 240 66.2
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.0e-81 305.4 256 62.9
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.4e-80 302.0 256 60.2
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 5.4e-78 295.0 231 62.8
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 1.2e-77 293.9 255 60.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-76 290.4 233 63.9
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.1e-75 287.3 201 70.6
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.3e-75 285.8 207 70.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 6.8e-73 278.1 260 59.2
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 8.9e-73 277.7 164 79.3
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 7.0e-70 268.1 238 60.1
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 6.6e-68 261.5 186 69.9
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-66 256.5 195 66.2
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 4.7e-66 255.4 176 72.2
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 5.2e-65 251.9 241 53.9
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.2e-64 250.8 131 93.1
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 5.4e-62 241.9 253 52.2
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.3e-60 237.3 259 50.2
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.3e-60 237.3 222 59.9
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.4e-57 227.3 222 55.0
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 5.3e-49 198.7 115 81.7
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 4.6e-45 185.7 144 68.1
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 8.7e-44 181.4 101 80.2
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.8e-42 176.4 144 67.4
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 5.3e-41 172.2 150 60.0
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 6.9e-41 171.8 258 40.3
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 5.8e-32 142.1 68 97.1
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 3.3e-27 126.3 93 65.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 3.3e-27 126.3 117 53.8
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 6.5e-23 112.1 57 86.0
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 2.2e-18 97.1 54 77.8
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 3.7e-18 96.3 78 64.1
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.4e-17 93.6 79 63.3
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.0e-16 90.5 72 69.4
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.1e-14 84.7 73 64.4
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 5.5e-14 82.4 72 62.5
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-12 76.3 87 52.9
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 7.4e-11 72.0 63 55.6
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.7e-08 62.0 68 52.9
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 5.5e-06 55.8 102 35.3


User provided reference genes

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