Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 3.1e-96 355.1 182 100.0
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 3.7e-89 331.6 180 93.3
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 4.5e-87 324.7 180 90.0
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 2.5e-85 318.9 179 90.5
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 8.0e-84 313.9 181 89.0
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 2.0e-79 299.3 180 86.1
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 4.8e-73 278.1 181 81.2
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 8.0e-68 260.8 163 84.0
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.4e-67 260.0 163 84.0
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 1.4e-67 260.0 184 75.5
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 2.3e-67 259.2 163 83.4
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 3.0e-67 258.8 163 83.4
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.5e-66 256.5 163 81.0
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 7.7e-63 244.2 163 78.5
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 3.8e-62 241.9 177 69.5
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 4.3e-61 238.4 171 70.2
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 2.8e-60 235.7 170 68.8
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 2.8e-60 235.7 170 68.8
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 8.9e-59 230.7 165 70.3
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 2.6e-58 229.2 177 66.7
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 7.5e-58 227.6 172 66.3
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 7.5e-58 227.6 171 67.8
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 9.8e-58 227.3 168 67.3
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 9.8e-58 227.3 172 66.3
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 2.2e-57 226.1 176 65.3
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 2.2e-57 226.1 172 66.9
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 2.2e-57 226.1 165 68.5
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 3.7e-57 225.3 173 67.1
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 6.4e-57 224.6 173 64.7
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 8.3e-57 224.2 165 67.3
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.1e-56 223.8 172 66.9
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.8e-56 223.0 171 69.0
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 4.1e-56 221.9 173 64.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 1.2e-55 220.3 177 66.1
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 1.6e-55 219.9 172 66.3
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 2.0e-55 219.5 177 62.1
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 2.0e-55 219.5 164 68.3
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.7e-55 219.2 171 64.9
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 3.5e-55 218.8 172 63.4
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 4.6e-55 218.4 147 73.5
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 5.9e-55 218.0 173 65.3
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.3e-54 216.9 172 66.3
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 1.7e-54 216.5 176 61.9
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.7e-54 216.5 151 72.2
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.7e-54 216.5 176 63.1
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.7e-54 216.5 176 63.1
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 3.0e-54 215.7 168 63.7
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 5.0e-54 214.9 172 64.5
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 5.0e-54 214.9 173 64.7
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 8.6e-54 214.2 176 63.1
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.9e-53 213.0 172 64.0
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.9e-53 213.0 176 61.9
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.9e-53 213.0 168 62.5
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 2.5e-53 212.6 172 61.6
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 2.5e-53 212.6 176 61.9
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 5.6e-53 211.5 147 72.1
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 7.3e-53 211.1 171 62.0
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 2.1e-52 209.5 177 62.7
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 6.2e-52 208.0 163 66.9
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.0e-51 207.2 171 60.8
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.8e-51 206.5 172 61.0
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 2.3e-51 206.1 164 65.9
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 4.0e-51 205.3 174 59.8
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.0e-51 205.3 162 61.1
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 8.9e-51 204.1 130 75.4
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 1.5e-50 203.4 172 60.5
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.6e-50 202.6 162 61.1
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 7.5e-50 201.1 172 60.5
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 9.8e-50 200.7 174 60.9
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 1.7e-49 199.9 172 59.9
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 1.7e-49 199.9 137 75.2
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.7e-49 199.9 170 61.2
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 2.2e-49 199.5 172 59.3
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.2e-49 199.5 151 67.5
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.2e-49 199.5 151 67.5
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 2.2e-49 199.5 164 61.6
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 4.9e-49 198.4 162 59.9
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 4.9e-49 198.4 170 60.0
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 8.3e-49 197.6 172 60.5
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.1e-48 197.2 174 58.6
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 1.9e-48 196.4 142 69.0
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.9e-48 196.4 172 62.2
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.9e-48 196.4 171 57.9
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.4e-48 196.1 176 58.5
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 3.2e-48 195.7 162 59.3
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 3.2e-48 195.7 162 58.6
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 4.1e-48 195.3 135 70.4
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 9.2e-48 194.1 201 55.2
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.6e-47 193.4 137 72.3
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 1.6e-47 193.4 171 62.0
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 2.0e-47 193.0 135 69.6
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 3.5e-47 192.2 168 62.5
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 6.0e-47 191.4 173 59.0
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.0e-46 190.7 176 55.1
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.7e-46 189.9 167 58.7
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 3.9e-46 188.7 231 49.4
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 8.6e-46 187.6 128 74.2
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.5e-45 186.0 172 61.0
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 5.6e-45 184.9 171 57.9
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 5.6e-45 184.9 128 70.3
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 7.3e-45 184.5 117 80.3
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 1.2e-44 183.7 172 60.5
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.6e-44 183.3 178 56.2
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 8.9e-43 177.6 117 71.8
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.7e-41 173.3 163 56.4
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.2e-41 172.9 166 57.8
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 4.1e-40 168.7 153 57.5
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 5.4e-40 168.3 107 73.8
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 9.2e-40 167.5 148 60.8
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 1.0e-38 164.1 114 69.3
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.3e-38 162.9 123 66.7
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 9.5e-37 157.5 163 59.5
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.1e-36 156.4 133 62.4
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 3.1e-35 152.5 162 54.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 9.9e-34 147.5 174 48.9
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 1.1e-32 144.1 165 49.1
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 4.1e-32 142.1 184 44.0
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.0e-31 138.3 171 47.4
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 1.6e-28 130.2 140 52.9
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 8.1e-28 127.9 171 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 7.1e-24 114.8 106 53.8
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.7e-23 112.8 140 47.1
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 4.6e-23 112.1 99 56.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 9.6e-21 104.4 117 49.6
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 1.2e-18 97.4 80 62.5
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.5e-18 97.1 85 60.0
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-18 94.7 138 42.8
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.2e-16 89.0 65 67.7
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 9.6e-13 77.8 81 51.9
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.8e-12 76.3 175 31.4
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.9e-08 63.5 116 37.9
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 4.2e-08 62.4 140 35.7


User provided reference genes

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