Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.2e-288 995.7 478 100.0
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 8.6e-279 963.0 478 96.4
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 3.6e-277 957.6 471 97.5
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.3e-276 954.9 479 95.8
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.4e-273 944.9 479 94.4
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 3.5e-272 941.0 478 93.9
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 6.6e-271 936.8 478 93.5
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 6.6e-271 936.8 478 93.5
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.5e-270 935.6 478 93.5
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.5e-270 934.9 478 93.3
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.8e-269 931.4 478 92.9
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.0e-268 927.5 486 91.8
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 3.7e-258 894.4 478 88.7
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.9e-257 892.1 486 87.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.1e-245 852.0 471 85.8
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.4e-244 849.4 479 84.6
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.8e-244 849.0 478 83.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 6.9e-244 847.0 478 83.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.9e-244 847.0 479 84.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.5e-243 845.9 478 82.8
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 5.8e-243 844.0 471 85.1
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 5.8e-243 844.0 479 84.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.3e-242 842.8 478 83.7
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.7e-242 842.4 478 82.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.9e-242 841.6 485 83.5
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.9e-242 841.6 477 83.2
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 8.4e-242 840.1 478 83.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.4e-241 839.3 478 83.3
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.4e-241 838.6 479 83.1
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 3.2e-241 838.2 471 84.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 9.3e-241 836.6 478 82.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.2e-240 836.3 474 84.4
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.6e-240 835.9 478 83.7
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.1e-240 835.5 478 82.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.1e-240 835.5 479 83.1
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.7e-240 835.1 478 82.6
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.5e-240 834.7 471 84.3
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 4.6e-240 834.3 481 83.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 4.6e-240 834.3 481 83.4
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.3e-239 832.8 481 83.2
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.3e-239 832.0 482 81.7
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 3.0e-239 831.6 480 83.3
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 3.9e-239 831.2 478 81.8
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 5.1e-239 830.9 478 81.6
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 8.7e-239 830.1 478 82.6
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.5e-238 828.6 465 83.0
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.5e-238 828.6 478 82.6
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.3e-238 828.2 471 83.0
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.3e-238 827.8 480 82.3
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.3e-238 827.0 481 82.3
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.3e-237 826.2 479 81.2
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.3e-237 826.2 480 82.1
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.1e-237 825.5 480 81.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 3.6e-237 824.7 485 81.2
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 4.8e-237 824.3 471 82.8
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 4.8e-237 824.3 480 81.0
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 8.1e-237 823.5 497 79.9
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.1e-237 823.5 471 82.6
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-236 822.8 478 82.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.4e-236 822.8 478 82.2
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.4e-236 822.8 480 81.7
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.4e-236 822.0 478 81.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 5.3e-236 820.8 480 82.1
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 5.3e-236 820.8 478 81.8
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 6.9e-236 820.5 479 81.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-235 819.7 479 81.6
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 4.5e-235 817.8 478 81.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 7.6e-235 817.0 478 81.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.3e-234 816.2 479 81.6
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.9e-234 815.1 486 80.2
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.9e-234 814.3 479 80.2
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.9e-233 812.4 472 81.4
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 3.2e-233 811.6 479 81.2
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 3.2e-233 811.6 457 84.7
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 4.2e-233 811.2 480 79.8
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 7.1e-233 810.4 478 80.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 9.3e-233 810.1 472 81.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.1e-232 808.9 484 80.4
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.6e-232 807.7 460 82.4
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 2.3e-231 805.4 470 81.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 6.7e-231 803.9 479 81.0
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.1e-230 803.1 473 80.5
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.5e-230 802.7 473 80.8
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 7.4e-230 800.4 486 78.8
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.1e-229 798.9 474 80.0
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 6.2e-229 797.3 471 80.9
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 8.1e-229 797.0 479 80.2
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.1e-228 796.6 479 80.2
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.2e-227 793.1 473 80.1
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 7.6e-227 790.4 475 78.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.9e-226 788.5 443 84.0
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-225 786.6 503 76.5
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.2e-225 785.0 491 77.4
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.2e-225 784.6 442 83.5
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 4.2e-225 784.6 474 79.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.3e-223 779.6 455 79.3
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 5.1e-223 777.7 473 78.9
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.5e-222 776.2 456 78.7
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 8.7e-215 750.4 482 76.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.5e-214 748.8 470 75.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 7.4e-214 747.3 506 73.5
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-212 743.0 478 75.1
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.4e-212 742.3 500 72.8
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.1e-212 741.5 478 75.1
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.4e-211 738.4 460 78.3
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 6.3e-205 717.6 475 71.6
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.0e-202 710.3 468 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 6.5e-202 707.6 469 71.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.0e-198 696.0 505 70.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.7e-197 693.0 481 71.3
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 2.8e-197 692.2 472 69.5
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.4e-196 689.9 384 82.8
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 2.8e-181 639.0 483 67.5
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.4e-180 634.8 463 68.0
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.7e-176 622.5 362 78.5
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.7e-173 613.2 362 77.9
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 4.9e-173 611.7 463 67.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 8.0e-160 567.8 473 62.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 3.9e-146 522.3 420 65.0
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.0e-142 510.0 304 76.6
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.2e-139 500.7 410 60.2
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 5.1e-138 495.4 281 84.3
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.2e-136 490.7 304 75.0
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.6e-136 490.3 275 84.7
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.4e-134 482.3 461 52.7
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.8e-128 462.2 306 73.2
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.3e-120 437.6 304 68.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.3e-114 416.8 416 54.6
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.7e-107 393.3 463 50.8
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.3e-105 386.3 255 72.5
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.8e-103 380.6 211 85.8
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.9e-98 362.8 228 76.3
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.9e-98 362.8 228 76.3
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.8e-93 346.3 427 48.9
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 5.9e-86 322.4 200 79.0
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.9e-85 320.1 180 82.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.9e-84 317.4 180 82.2
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 1.5e-68 264.6 148 79.1
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.1e-63 246.9 171 67.8
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 4.1e-63 246.5 171 67.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 5.7e-49 199.5 111 83.8
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 2.9e-48 197.2 99 85.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 2.9e-48 197.2 99 85.9
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 9.5e-36 155.6 105 69.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 6.2e-35 152.9 97 73.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.8e-33 145.6 95 77.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.6e-30 138.3 77 80.5
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 4.7e-27 126.7 85 69.4
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 6.2e-27 126.3 77 76.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.2e-22 112.1 135 43.7
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 7.8e-22 109.4 75 66.7
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 3.0e-21 107.5 65 73.8
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 6.2e-19 99.8 56 76.8
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 9.3e-15 85.9 55 72.7
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 2.1e-14 84.7 55 72.7
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 2.1e-14 84.7 55 72.7
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 2.7e-14 84.3 81 53.1
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 4.6e-14 83.6 105 49.5
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 1.3e-13 82.0 55 70.9
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 1.3e-13 82.0 55 70.9
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 2.3e-13 81.3 85 49.4
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 3.0e-13 80.9 55 70.9
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 3.0e-13 80.9 54 68.5
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.9e-13 80.5 72 58.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.9e-13 80.5 72 58.3
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 3.3e-12 77.4 55 63.6
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 3.3e-12 77.4 55 63.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 8.1e-11 72.8 35 85.7
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 5.3e-10 70.1 73 54.8
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 9.9e-09 65.9 48 60.4
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 1.4e-07 62.0 60 50.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 4.2e-07 60.5 35 77.1
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 4.2e-07 60.5 60 51.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 4.2e-07 60.5 37 75.7
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 1.6e-06 58.5 44 63.6


User provided reference genes

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