Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1749 Capsella rubella HOM05D003310 ORTHO05D114567 4.0e-47 191.0 94 100.0
AL8G34160 Arabidopsis lyrata HOM05D003310 ORTHO05D003911 5.7e-09 64.3 86 47.7
AT5G58060 Arabidopsis thaliana HOM05D003310 ORTHO05D003911 5.7e-09 64.3 86 47.7
Carub.0008s1861 Capsella rubella HOM05D003310 ORTHO05D003911 5.7e-09 64.3 85 49.4
CARHR271870 Cardamine hirsuta HOM05D003310 ORTHO05D003911 2.8e-08 62.0 86 46.5
Aa31LG3G13890 Aethionema arabicum HOM05D003310 ORTHO05D003911 3.7e-08 61.6 85 47.1
Sed0010420 Sechium edule HOM05D003310 ORTHO05D003911 8.2e-08 60.5 86 45.3
BcaB08g36153 Brassica carinata HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
BcaC03g14126 Brassica carinata HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
BcaC04g19910 Brassica carinata HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
A10p16110 Brassica napus HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
C02p13660 Brassica napus HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
C09p49980 Brassica napus HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
BolC2t07478H Brassica oleracea HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
BolC9t57851H Brassica oleracea HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
BraA10t43618Z Brassica rapa HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
Sp6g19730 Schrenkiella parvula HOM05D003310 ORTHO05D003911 1.1e-07 60.1 86 45.3
HanXRQChr03g0092001 Helianthus annuus HOM05D003310 ORTHO05D003911 1.8e-07 59.3 88 44.3
RcHm_v2.0_Chr2g0086021 Rosa chinensis HOM05D003310 ORTHO05D003911 1.8e-07 59.3 86 44.2
THA.LOC104813543 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 1.8e-07 59.3 85 44.7
THA.LOC104817832 Tarenaya hassleriana HOM05D003310 ORTHO05D003911 1.8e-07 59.3 85 44.7
BcaB05g22399 Brassica carinata HOM05D003310 ORTHO05D003911 2.4e-07 58.9 86 44.2
A02p08010 Brassica napus HOM05D003310 ORTHO05D003911 2.4e-07 58.9 86 44.2
BraA02t05873Z Brassica rapa HOM05D003310 ORTHO05D003911 2.4e-07 58.9 86 44.2
Thhalv10014720m.g Eutrema salsugineum HOM05D003310 ORTHO05D003911 2.4e-07 58.9 86 44.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.4e-07 58.9 86 44.2
ClCG06G012230 Citrullus lanatus HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
MELO3C010243.2 Cucumis melo HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
CsaV3_1G028720 Cucumis sativus L. HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
Eucgr.C04043 Eucalyptus grandis HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 43.0
Eucgr.L00628 Eucalyptus grandis HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 43.0
PSO210G7514 Papaver somniferum HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
PSO761G0723 Papaver somniferum HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
Sed0019848 Sechium edule HOM05D003310 ORTHO05D003911 4.1e-07 58.2 86 44.2
FvH4_1g01250 Fragaria vesca HOM05D003310 ORTHO05D003911 5.3e-07 57.8 86 44.2
FAN19G2646 Fragaria x ananassa HOM05D003310 ORTHO05D003911 5.3e-07 57.8 86 44.2
FAN26G1724 Fragaria x ananassa HOM05D003310 ORTHO05D003911 5.3e-07 57.8 86 44.2
HanXRQChr09g0243541 Helianthus annuus HOM05D003310 ORTHO05D003911 5.3e-07 57.8 86 43.0
Peaxi162Scf00108g00616 Petunia axillaris HOM05D003310 ORTHO05D003911 5.3e-07 57.8 88 43.2
unitig_52.g17568 Utricularia gibba HOM05D003310 ORTHO05D003911 5.3e-07 57.8 86 43.0
AUR62043315 Chenopodium quinoa HOM05D003310 ORTHO05D003911 6.9e-07 57.4 86 43.0
Migut.K00345 Erythranthe guttata HOM05D003310 ORTHO05D003911 6.9e-07 57.4 86 43.0
FAN23G1365 Fragaria x ananassa HOM05D003310 ORTHO05D003911 6.9e-07 57.4 85 43.5
Nn2g14304 Nelumbo nucifera HOM05D003310 ORTHO05D003911 6.9e-07 57.4 86 41.9
Peaxi162Scf00347g00622 Petunia axillaris HOM05D003310 ORTHO05D003911 6.9e-07 57.4 85 44.7
CAN.G520.20 Capsicum annuum HOM05D003310 ORTHO05D003911 9.1e-07 57.0 85 44.7
Nitab4.5_0001094g0120 Nicotiana tabacum HOM05D003310 ORTHO05D003911 9.1e-07 57.0 85 44.7
Nitab4.5_0005407g0030 Nicotiana tabacum HOM05D003310 ORTHO05D003911 9.1e-07 57.0 85 44.7
Solyc07g005200.3 Solanum lycopersicum HOM05D003310 ORTHO05D003911 9.1e-07 57.0 85 44.7
Sopen07g001570 Solanum pennellii HOM05D003310 ORTHO05D003911 9.1e-07 57.0 85 44.7
Actinidia04282 Actinidia chinensis HOM05D003310 ORTHO05D003911 1.2e-06 56.6 86 43.0
Actinidia38342 Actinidia chinensis HOM05D003310 ORTHO05D003911 1.2e-06 56.6 86 43.0
ECA240G3497 Erigeron canadensis HOM05D003310 ORTHO05D003911 1.2e-06 56.6 86 41.9
ECA240G4234 Erigeron canadensis HOM05D003310 ORTHO05D003911 1.2e-06 56.6 86 43.0
MD02G1010400 Malus domestica HOM05D003310 ORTHO05D003911 1.2e-06 56.6 86 43.0
Hund08390 Selenicereus undatus HOM05D003310 ORTHO05D003911 1.2e-06 56.6 82 42.7
EL10Ac9g22448 Beta vulgaris HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 41.9
CSS0017962 Camellia sinensis var. sinensis HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
AUR62039179 Chenopodium quinoa HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 41.9
DCAR_017901 Daucus carota HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
DCAR_019371 Daucus carota HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Dinv42887 Davidia involucrata HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Dinv43213 Davidia involucrata HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Duzib187G0039 Durio zibethinus HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Eucgr.C00369 Eucalyptus grandis HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Lj9A713T34 Lonicera japonica HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Potri.006G187700 Populus trichocarpa HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Potri.018G110700 Populus trichocarpa HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Thecc.09G034100 Theobroma cacao HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
VMungo0464G0291 Vigna mungo HOM05D003310 ORTHO05D003911 1.5e-06 56.2 86 43.0
Migut.J01319 Erythranthe guttata HOM05D003310 ORTHO05D003911 2.6e-06 55.5 86 41.9
Hma1.2p1_0028F.1_g017350 Hydrangea macrophylla HOM05D003310 ORTHO05D003911 2.6e-06 55.5 86 41.9
Os01g0866300 Oryza sativa ssp. japonica HOM05D003310 ORTHO05D003911 2.6e-06 55.5 85 42.4
PGR102G2532 Punica granatum HOM05D003310 ORTHO05D003911 2.6e-06 55.5 86 41.9
ATR0561G028 Amborella trichopoda HOM05D003310 ORTHO05D003911 3.4e-06 55.1 86 39.5
CiPaw.16G115200 Carya illinoinensis HOM05D003310 ORTHO05D003911 3.4e-06 55.1 86 41.9
Dinv41402 Davidia involucrata HOM05D003310 ORTHO05D003911 3.4e-06 55.1 85 42.4
HanXRQChr10g0314611 Helianthus annuus HOM05D003310 ORTHO05D003911 3.4e-06 55.1 86 40.7
HanXRQChr12g0357281 Helianthus annuus HOM05D003310 ORTHO05D003911 3.4e-06 55.1 86 40.7
PGSC0003DMG400003194 Solanum tuberosum HOM05D003310 ORTHO05D003911 3.4e-06 55.1 85 43.5
MD15G1155400 Malus domestica HOM05D003310 ORTHO05D003911 4.5e-06 54.7 86 41.9
Gohir.A05G051300 Gossypium hirsutum HOM05D003310 ORTHO05D003911 5.9e-06 54.3 86 40.7
Gohir.D05G052800 Gossypium hirsutum HOM05D003310 ORTHO05D003911 5.9e-06 54.3 86 40.7
Gorai.009G054600 Gossypium raimondii HOM05D003310 ORTHO05D003911 5.9e-06 54.3 86 40.7
Nn2g14309 Nelumbo nucifera HOM05D003310 ORTHO05D003911 5.9e-06 54.3 85 41.2
Cc06_g15310 Coffea canephora HOM05D003310 ORTHO05D003911 7.7e-06 53.9 86 40.7


User provided reference genes

Program Settings