Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 0.0e+00 1181.0 729 100.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 0.0e+00 1124.8 729 92.7
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 0.0e+00 1122.8 729 94.2
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 0.0e+00 1097.0 729 90.3
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 0.0e+00 1084.3 729 91.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-311 1072.0 731 89.9
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 7.5e-311 1070.1 731 91.0
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 4.3e-306 1054.3 730 89.3
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-304 1049.3 731 89.1
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-304 1048.5 731 87.3
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-302 1042.7 732 88.3
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.9e-301 1038.9 733 88.4
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 3.9e-299 1031.2 757 82.4
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 3.9e-299 1031.2 767 81.7
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.7e-297 1024.6 732 88.4
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 9.0e-296 1020.0 758 75.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.9e-290 1002.3 732 86.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 9.1e-280 966.8 732 80.6
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 8.8e-267 923.7 733 78.9
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-263 912.5 782 75.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.2e-240 835.5 746 70.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.3e-230 802.7 749 67.8
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 3.0e-230 802.4 751 68.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-229 800.4 746 72.5
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-229 798.9 746 72.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 7.3e-229 797.7 747 72.4
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.2e-228 797.0 745 68.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-228 796.2 747 72.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.8e-228 795.8 747 70.0
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.8e-228 795.8 747 70.0
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.2e-227 791.6 737 69.3
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 8.9e-227 790.8 748 70.5
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 9.8e-226 787.3 754 69.0
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.3e-225 786.9 640 65.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.9e-225 785.8 747 67.2
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 4.9e-225 785.0 765 66.9
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 9.2e-224 780.8 772 65.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.6e-223 780.0 794 54.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.5e-223 778.9 750 67.9
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 6.0e-223 778.1 747 68.0
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.3e-222 776.9 629 65.7
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.5e-221 773.5 750 66.7
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 5.6e-221 771.5 744 68.3
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.6e-220 770.0 741 66.9
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.6e-220 768.8 762 66.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.2e-220 768.1 754 66.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.8e-219 766.5 770 66.4
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.5e-218 763.5 754 66.7
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.4e-218 761.9 744 66.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 7.6e-218 761.1 738 66.9
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 9.9e-218 760.8 744 67.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.3e-217 760.4 755 67.3
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.3e-217 760.4 742 66.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.4e-216 756.9 742 67.1
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 4.1e-216 755.4 755 66.9
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.1e-216 755.4 751 66.3
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-215 753.8 751 66.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.6e-215 753.4 741 66.9
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.6e-215 751.9 740 66.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.0e-214 750.7 738 67.5
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 6.6e-214 748.0 751 66.2
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 6.6e-214 748.0 762 64.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 6.6e-214 748.0 762 64.3
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 8.6e-214 747.7 754 70.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.5e-213 746.9 748 66.8
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.5e-213 746.9 751 66.0
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.9e-213 746.5 740 66.6
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 2.5e-213 746.1 744 68.0
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 7.3e-213 744.6 763 65.9
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.1e-212 743.0 754 69.9
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 4.7e-212 741.9 764 65.2
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 8.1e-212 741.1 784 62.9
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.4e-211 740.3 775 64.3
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.8e-211 740.0 753 66.3
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.0e-211 738.8 749 65.4
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 5.8e-210 734.9 823 61.0
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 5.8e-210 734.9 749 67.3
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 5.8e-210 734.9 749 67.4
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.6e-210 734.6 757 63.7
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 9.9e-210 734.2 751 67.2
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.3e-209 733.8 774 63.0
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.8e-209 732.3 753 67.9
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 4.9e-209 731.9 753 68.0
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.1e-208 730.7 752 67.0
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.2e-207 727.2 735 64.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 6.0e-207 724.9 843 59.2
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 5.1e-206 721.8 757 64.5
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.6e-204 716.8 756 65.2
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.4e-203 713.8 784 52.7
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.4e-202 709.1 741 66.3
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 9.9e-202 707.6 756 64.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.7e-201 706.8 639 63.5
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 8.4e-201 704.5 838 61.0
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.4e-200 703.7 789 54.2
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.0e-198 696.0 682 69.5
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.6e-196 690.3 745 64.3
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.2e-196 688.3 744 62.1
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.1e-195 687.6 738 65.9
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 6.9e-195 684.9 772 60.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.2e-192 675.6 788 59.6
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.8e-182 643.7 786 58.4
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.7e-180 636.0 746 62.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.2e-180 635.2 804 59.2
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 9.7e-173 611.3 748 58.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.5e-170 602.4 770 46.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.6e-167 594.0 563 61.8
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 8.2e-156 555.1 771 56.9
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.1e-155 554.7 1241 40.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.5e-152 543.5 720 58.2
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 5.2e-150 535.8 765 53.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.7e-149 531.6 545 66.4
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.1e-147 525.0 761 56.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.0e-145 521.5 753 55.5
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.9e-138 495.7 751 53.9
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 6.3e-132 475.7 752 53.1
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 9.2e-131 471.9 451 57.4
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.0e-117 427.6 438 53.7
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.5e-112 410.6 453 51.4
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 6.6e-105 386.0 603 43.3
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.2e-99 367.1 380 53.2
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.5e-93 348.2 315 81.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.8e-92 343.6 341 78.0
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.2e-90 338.6 314 83.1
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 9.6e-88 328.9 304 83.2
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 3.1e-86 323.9 377 50.4
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.7e-84 318.2 482 44.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.6e-77 294.3 330 52.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.0e-73 280.8 198 66.2
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 6.9e-70 269.6 731 33.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 7.6e-69 266.2 476 40.1
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.1e-67 262.3 841 39.2
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.4e-56 223.0 126 86.5
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.7e-52 211.8 693 29.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-44 183.3 228 49.1
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-40 170.2 98 85.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-39 167.9 90 88.9
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.5e-35 155.6 96 76.0
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-30 139.4 93 80.6
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-30 138.7 84 82.1
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-30 138.3 226 39.4
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-30 137.5 76 88.2
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.6e-29 135.6 226 40.7
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-28 132.1 166 50.0
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-27 129.0 226 38.5
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-27 128.6 68 88.2
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-26 125.2 102 63.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-26 123.6 66 84.8
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 3.4e-24 117.9 136 58.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.8e-23 114.8 140 51.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.7e-23 114.4 70 78.6
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.4e-22 111.7 139 48.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-22 109.8 61 83.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-21 107.8 60 85.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 3.8e-20 104.4 117 55.6
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.5e-19 102.4 155 91.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.0e-17 94.7 103 53.4
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.6e-16 91.7 115 50.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.8e-15 88.2 154 84.4
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-14 85.9 84 52.4
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.8e-14 85.5 186 33.9
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-12 78.6 60 70.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.3e-11 74.7 105 47.6
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.2e-08 66.2 186 28.5
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.4e-08 64.7 105 41.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 3.4e-08 64.7 41 73.2
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 5.7e-08 63.9 31 93.5
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.4e-06 58.5 31 83.9
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 3.2e-06 58.2 30 90.0
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 3.2e-06 58.2 30 90.0
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 57.0 25 96.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.2e-06 56.6 30 83.3
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 9.2e-06 56.6 31 80.6


User provided reference genes

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