Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 0.0e+00 1389.8 859 100.0
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 0.0e+00 1095.9 900 76.8
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 3.6e-267 925.2 675 77.3
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 3.0e-266 922.2 865 72.3
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.1e-265 920.2 863 69.8
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 4.8e-264 914.8 865 72.0
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 8.2e-264 914.1 862 70.8
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.5e-262 909.8 865 71.3
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 3.0e-258 895.6 892 68.2
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 4.7e-227 792.0 674 80.9
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 4.1e-215 752.3 718 73.8
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 2.8e-187 659.8 931 54.6
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 7.1e-183 645.2 889 57.1
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 2.5e-143 513.8 716 48.0
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.2e-142 511.5 754 47.3
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.0e-141 506.5 674 47.3
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 3.7e-139 500.0 757 47.3
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 5.3e-138 496.1 645 49.5
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.7e-136 491.1 656 48.2
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.2e-134 485.0 695 46.3
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 2.1e-134 484.2 741 46.3
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 2.6e-132 477.2 700 45.4
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 4.8e-131 473.0 688 44.5
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 8.3e-131 472.2 708 45.5
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 9.1e-130 468.8 538 53.3
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 1.5e-127 461.5 718 44.8
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 3.2e-127 460.3 661 46.3
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 2.3e-125 454.1 664 44.7
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 8.8e-125 452.2 767 43.7
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 4.4e-124 449.9 711 44.7
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.8e-123 447.2 724 44.6
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 6.3e-123 446.0 692 45.5
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 3.1e-122 443.7 668 45.1
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 9.1e-122 442.2 649 45.5
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-121 441.8 709 45.1
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 4.5e-121 439.9 668 44.8
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 7.7e-121 439.1 727 44.2
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 2.5e-119 434.1 715 42.8
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.6e-118 431.4 651 45.9
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.6e-118 431.4 723 42.9
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 3.0e-117 427.2 760 41.8
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 5.2e-117 426.4 722 43.6
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 3.4e-116 423.7 676 44.1
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 1.3e-115 421.8 730 42.1
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.7e-115 420.2 719 42.8
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 3.7e-115 420.2 716 44.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 2.4e-114 417.5 710 43.2
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.2e-113 415.2 679 43.3
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 5.9e-113 412.9 644 44.3
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.0e-112 412.1 731 41.3
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.3e-112 411.8 690 43.9
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.5e-111 407.5 721 42.3
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.8e-109 401.4 742 43.3
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 2.3e-109 401.0 543 46.4
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 7.5e-108 396.0 643 44.2
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.8e-108 395.6 709 42.6
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 1.7e-107 394.8 711 42.2
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 4.9e-107 393.3 764 38.9
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 3.0e-104 384.0 712 38.1
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 7.3e-103 379.4 737 38.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 2.1e-102 377.9 768 38.4
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 4.7e-102 376.7 715 37.9
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 4.0e-101 373.6 764 38.4
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 2.2e-99 367.9 713 38.4
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 1.3e-96 358.6 528 45.3
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 3.4e-92 344.0 518 44.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.9e-91 340.9 554 43.9
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 8.4e-91 339.3 648 41.4
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 7.8e-89 332.8 750 37.6
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.2e-86 325.5 681 37.4
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 2.1e-86 324.7 551 42.8
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 2.6e-84 317.8 709 37.7
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.3e-83 315.5 780 35.1
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.2e-83 314.7 529 42.5
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 2.2e-83 314.7 596 41.1
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 4.9e-83 313.5 577 43.5
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 8.4e-83 312.8 582 42.1
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 3.5e-81 307.4 508 42.3
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 4.6e-81 307.0 516 44.2
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 7.8e-81 306.2 577 42.1
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 7.8e-81 306.2 796 34.2
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.3e-80 305.4 548 41.8
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 3.1e-77 294.3 802 34.0
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 9.9e-76 289.3 630 37.6
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.4e-74 285.4 787 31.9
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 9.3e-74 282.7 319 53.3
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 9.3e-74 282.7 569 40.1
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.8e-70 271.2 502 41.6
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 5.8e-68 263.5 786 30.7
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 1.3e-67 262.3 514 37.7
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 4.6e-65 253.8 261 55.6
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.3e-63 247.7 337 45.7
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 4.0e-61 240.7 510 39.2
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 5.3e-61 240.4 501 40.1
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 2.9e-59 234.6 511 38.7
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 1.4e-58 232.3 605 35.9
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 1.6e-54 218.8 142 76.1
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 2.7e-49 201.4 820 29.3
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 1.5e-47 195.7 322 41.9
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.6e-44 184.9 346 39.9
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 4.5e-44 184.1 494 31.4
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.1e-41 175.3 393 37.4
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 9.4e-34 149.8 142 56.3
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 4.7e-33 147.5 146 54.8
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 4.7e-33 147.5 150 60.0
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 1.4e-32 146.0 145 52.4
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 4.4e-31 141.0 145 51.7
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 5.7e-31 140.6 149 55.0
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.8e-30 138.3 149 52.3
BcaB08g35874 Brassica carinata HOM05D006512 ORTHO05D008027 3.7e-30 137.9 313 36.4
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 3.5e-28 131.3 136 53.7
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 3.5e-28 131.3 539 29.1
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.2e-25 122.9 147 49.0
BcaC01g06346 Brassica carinata HOM05D006512 ORTHO05D008027 1.5e-18 99.4 78 64.1
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 2.0e-12 79.0 79 55.7
BolC1t01000H Brassica oleracea HOM05D014849 ORTHO05D016773 1.3e-11 76.3 55 70.9
BcaC01g02979 Brassica carinata HOM05D014849 ORTHO05D016773 1.7e-11 75.9 57 68.4
C03p57530 Brassica napus HOM05D014849 ORTHO05D016773 1.7e-11 75.9 57 68.4
BolC3t18029H Brassica oleracea HOM05D014849 ORTHO05D016773 1.7e-11 75.9 57 68.4
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 2.9e-11 75.1 56 69.6
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 2.9e-11 75.1 56 69.6
BcaC05g27764 Brassica carinata HOM05D014849 ORTHO05D016773 8.5e-11 73.6 57 66.7
C05p37640 Brassica napus HOM05D014849 ORTHO05D016773 8.5e-11 73.6 57 66.7
A09p24940 Brassica napus HOM05D014849 ORTHO05D016773 1.5e-10 72.8 56 67.9
BolC5t32504H Brassica oleracea HOM05D014849 ORTHO05D016773 1.9e-10 72.4 55 67.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-10 71.2 80 46.2
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 2.1e-09 68.9 68 47.1
C09p45890 Brassica napus HOM05D006512 ORTHO05D008027 9.8e-07 60.1 44 65.9
BcaC04g20270 Brassica carinata HOM05D006512 ORTHO05D008027 3.7e-06 58.2 60 56.7


User provided reference genes

Program Settings