Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 4.1e-122 441.4 225 100.0
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 2.3e-101 372.5 228 85.5
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.6e-97 359.8 229 82.1
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 3.3e-95 352.1 229 80.8
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 5.2e-93 344.7 229 78.2
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.0e-92 342.8 229 77.7
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.0e-88 330.5 230 79.1
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.3e-88 330.1 233 77.3
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.5e-87 325.9 229 75.5
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.5e-87 325.9 229 75.5
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 4.0e-85 318.5 241 72.2
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.8e-84 313.9 228 71.5
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.7e-83 313.2 229 73.8
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 8.6e-80 300.8 205 77.1
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 8.6e-80 300.8 230 69.6
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 7.3e-79 297.7 233 67.8
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 5.2e-77 291.6 230 70.4
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.6e-76 289.3 230 70.0
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 1.1e-74 283.9 236 67.4
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.1e-69 267.3 240 64.6
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.4e-69 266.2 231 68.8
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-62 243.0 164 76.2
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 5.8e-60 235.0 233 56.7
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 7.6e-60 234.6 233 56.7
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 9.9e-60 234.2 230 59.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.7e-59 233.4 232 58.6
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.7e-59 233.4 232 58.6
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 2.2e-59 233.0 238 58.4
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.8e-59 232.3 233 55.8
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.8e-59 232.3 230 57.4
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 8.4e-59 231.1 232 57.3
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.4e-58 230.3 232 57.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.9e-58 229.9 231 57.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 4.2e-58 228.8 228 58.3
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 9.3e-58 227.6 232 55.6
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.2e-57 227.3 231 53.7
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.6e-57 226.9 230 60.4
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.6e-57 226.9 232 58.2
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.7e-57 226.1 239 54.4
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.7e-57 226.1 229 56.8
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 6.0e-57 224.9 229 58.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 7.9e-57 224.6 229 55.9
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.0e-56 224.2 232 56.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.3e-56 223.8 214 60.7
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 2.3e-56 223.0 247 51.8
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 6.6e-56 221.5 231 55.8
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 8.7e-56 221.1 234 56.0
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 2.5e-55 219.5 237 56.5
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 3.3e-55 219.2 258 55.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 5.6e-55 218.4 233 56.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.6e-55 218.4 229 55.9
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 9.6e-55 217.6 236 57.2
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 2.1e-54 216.5 233 54.9
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 4.8e-54 215.3 239 53.1
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.1e-53 214.2 234 57.7
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.1e-53 214.2 240 55.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.4e-53 213.8 218 56.0
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.8e-53 213.4 232 53.4
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 2.4e-53 213.0 231 57.6
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 3.1e-53 212.6 231 57.1
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 3.1e-53 212.6 240 54.2
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 4.0e-53 212.2 233 54.1
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 5.3e-53 211.8 235 51.9
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 9.0e-53 211.1 214 59.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 2.6e-52 209.5 232 57.3
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 4.5e-52 208.8 235 51.5
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 5.8e-52 208.4 233 55.4
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 7.6e-52 208.0 217 60.4
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 7.6e-52 208.0 233 52.8
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 9.9e-52 207.6 233 57.1
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.3e-51 207.2 240 55.0
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.7e-51 206.8 243 50.6
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.9e-51 206.1 235 50.6
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 4.9e-51 205.3 231 54.5
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.4e-51 204.5 227 52.9
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.1e-50 204.1 229 52.0
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-50 204.1 230 49.6
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.9e-50 203.4 235 51.9
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.4e-50 203.0 231 52.4
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 7.1e-50 201.4 235 50.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 9.3e-50 201.1 205 55.6
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 9.3e-50 201.1 230 53.5
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.6e-49 200.3 236 55.1
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.1e-49 199.9 235 49.8
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.5e-49 199.1 230 54.3
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.5e-49 199.1 236 55.5
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.0e-48 197.6 230 51.3
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.3e-48 197.2 229 52.0
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 3.0e-48 196.1 217 59.0
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.0e-48 196.1 237 55.3
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.0e-48 196.1 230 56.1
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 3.9e-48 195.7 234 49.6
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 3.9e-48 195.7 152 65.1
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 5.1e-48 195.3 232 50.4
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.7e-48 194.5 236 50.0
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.1e-47 194.1 232 50.0
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.5e-47 193.7 240 49.2
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.5e-47 193.7 249 48.2
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.9e-47 193.4 239 49.0
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.9e-47 193.4 231 50.2
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 3.3e-47 192.6 236 50.4
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 4.3e-47 192.2 238 48.7
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.3e-47 192.2 245 48.2
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 1.6e-46 190.3 231 53.2
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.8e-46 189.5 228 50.9
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 4.8e-46 188.7 148 66.2
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 6.2e-46 188.3 238 48.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.4e-45 187.2 156 61.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.4e-45 187.2 150 62.0
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.4e-45 186.4 224 49.1
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 3.1e-45 186.0 190 54.2
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 4.0e-45 185.7 231 46.8
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 3.4e-44 182.6 150 59.3
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.4e-44 182.6 213 50.2
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.4e-44 182.6 237 47.3
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.7e-43 180.3 220 48.2
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.7e-43 180.3 206 49.5
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 2.9e-43 179.5 247 46.2
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.8e-43 179.1 230 47.4
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 4.9e-43 178.7 232 47.4
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 6.5e-43 178.3 206 49.5
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.6e-41 173.7 186 58.1
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 2.1e-41 173.3 229 46.3
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 1.0e-40 171.0 243 44.4
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 2.3e-40 169.9 213 53.5
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.9e-39 166.8 230 46.1
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 7.4e-39 164.9 263 41.1
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 4.8e-38 162.2 130 63.1
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 3.1e-37 159.5 232 45.7
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.5e-36 157.1 159 62.3
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 5.9e-36 155.2 145 55.9
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 3.8e-35 152.5 190 53.7
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 6.5e-35 151.8 230 42.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.2e-34 148.3 142 56.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.6e-33 147.1 233 43.3
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 6.1e-33 145.2 129 59.7
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.0e-32 144.4 234 40.6
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 3.3e-31 139.4 249 39.0
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 6.3e-30 135.2 146 54.1
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 2.5e-26 123.2 240 38.8
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 7.9e-25 118.2 91 70.3
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 7.4e-23 111.7 216 36.1
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.3e-22 110.9 174 42.0
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 3.1e-21 106.3 226 34.1
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 6.5e-19 98.6 74 62.2
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 5.5e-18 95.5 84 56.0
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 3.0e-16 89.7 56 71.4
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.1e-15 87.8 56 67.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.6e-15 86.7 77 57.1
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 7.2e-10 68.6 70 45.7
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.0e-08 64.7 43 67.4
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 4.0e-08 62.8 69 47.8
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.1e-07 61.2 72 40.3
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.7e-07 58.2 46 60.9
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.7e-06 57.4 48 52.1


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