Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.1e-46 188.7 97 100.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 1.1e-44 183.0 97 94.8
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.3e-44 181.4 97 94.8
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 4.7e-43 177.6 97 92.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.5e-41 172.6 97 88.7
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.9e-40 168.3 97 88.7
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 8.4e-40 166.8 97 86.6
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.4e-39 166.0 97 86.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.4e-39 166.0 97 86.6
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.6e-38 162.5 93 88.2
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.5e-38 161.4 95 84.2
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.5e-38 161.4 95 84.2
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 4.6e-38 161.0 97 85.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 6.0e-38 160.6 95 84.2
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-37 159.5 99 83.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-37 159.5 99 83.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.3e-37 159.5 99 83.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 8.7e-37 156.8 95 85.3
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 8.7e-37 156.8 95 85.3
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 8.7e-37 156.8 95 85.3
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 8.7e-37 156.8 95 85.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.4e-34 148.7 96 81.2
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 3.4e-33 144.8 80 90.0
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 3.4e-33 144.8 80 90.0
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 3.4e-33 144.8 80 90.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.7e-30 135.2 95 72.6
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.3e-29 132.9 95 69.5
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.8e-29 132.5 95 68.4
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.9e-29 131.3 96 69.8
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.9e-29 131.3 90 68.9
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.7e-29 130.2 95 67.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.1e-28 129.8 81 76.5
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.1e-28 129.8 95 68.4
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 83 74.7
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.5e-28 129.4 83 77.1
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.5e-28 129.4 96 62.5
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.5e-28 129.4 92 68.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.5e-28 129.4 80 76.2
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-28 129.0 84 72.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.9e-28 129.0 80 78.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.5e-28 128.6 95 68.4
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 3.3e-28 128.3 82 76.8
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 3.3e-28 128.3 82 76.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.3e-28 128.3 76 85.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 4.3e-28 127.9 81 76.5
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 4.3e-28 127.9 96 67.7
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.3e-28 127.9 82 76.8
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.3e-28 127.9 82 74.4
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.6e-28 127.5 95 69.5
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.6e-28 127.5 94 69.1
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 7.4e-28 127.1 96 67.7
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 9.6e-28 126.7 81 74.1
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 9.6e-28 126.7 81 75.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 92 67.4
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.3e-27 126.3 94 67.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.3e-27 126.3 96 69.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-27 125.9 96 67.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.6e-27 125.9 84 71.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.1e-27 125.6 79 75.9
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.1e-27 125.6 86 72.1
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.1e-27 125.6 82 73.2
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.8e-27 125.2 92 65.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.8e-27 125.2 81 76.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.8e-27 125.2 82 70.7
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.8e-27 125.2 93 66.7
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.7e-27 124.8 96 61.5
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.7e-27 124.8 81 74.1
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.7e-27 124.8 81 74.1
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 4.8e-27 124.4 94 61.7
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.8e-27 124.4 95 67.4
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 4.8e-27 124.4 99 61.6
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.2e-27 124.0 95 68.4
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 6.2e-27 124.0 81 72.8
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.1e-27 123.6 94 62.8
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 8.1e-27 123.6 81 74.1
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.1e-27 123.6 80 71.2
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.1e-26 123.2 97 71.1
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 71.6
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 74.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 92 65.2
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.4e-26 122.9 92 65.2
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.4e-26 122.1 86 73.3
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.1e-26 121.7 92 65.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 6.9e-26 120.6 84 66.7
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 6.9e-26 120.6 81 71.6
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 9.0e-26 120.2 85 65.9
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 9.0e-26 120.2 80 73.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 9.0e-26 120.2 88 65.9
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 9.0e-26 120.2 95 60.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.2e-25 119.8 81 72.8
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-25 119.8 100 61.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.5e-25 119.4 80 72.5
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.5e-25 119.4 101 62.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.6e-25 118.6 95 62.1
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.4e-25 118.2 84 66.7
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 3.4e-25 118.2 98 61.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.4e-25 118.2 81 71.6
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.8e-25 117.5 80 75.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.3e-24 116.3 76 75.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 89 68.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.7e-24 115.9 88 62.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-24 115.9 94 59.6
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.7e-24 115.9 92 67.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.7e-24 115.9 92 67.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-24 115.5 95 64.2
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 2.9e-24 115.2 86 64.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 2.9e-24 115.2 85 68.2
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 6.4e-24 114.0 94 58.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.1e-23 113.2 79 69.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.1e-23 113.2 76 76.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.4e-23 112.8 74 75.7
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.4e-23 112.8 74 75.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-23 112.5 71 78.9
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.4e-23 112.1 76 69.7
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 3.2e-23 111.7 81 70.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.2e-23 111.7 76 72.4
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.2e-23 111.7 82 63.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 5.5e-23 110.9 76 69.7
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.6e-22 109.4 80 71.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.1e-22 109.0 76 71.1
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.6e-22 107.8 76 71.1
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.6e-22 107.8 81 66.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 4.6e-22 107.8 76 68.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 4.6e-22 107.8 75 73.3
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.0e-22 107.5 94 57.4
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.0e-22 107.5 82 65.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.3e-21 106.3 94 57.4
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-21 106.3 100 60.0
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.5e-20 102.8 81 55.6
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.4e-18 96.3 75 66.7
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 9.0e-18 93.6 80 62.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.0e-17 92.4 73 64.4
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 3.4e-17 91.7 78 59.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.8e-17 90.9 78 60.3
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.0e-16 90.1 79 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.3e-16 89.7 77 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.4e-15 86.3 78 60.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.9e-15 85.9 72 61.1
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.3e-12 75.1 71 52.1
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.4e-12 73.9 48 68.8
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.7e-12 73.6 52 67.3
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.7e-12 73.6 52 67.3
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.6e-11 72.8 83 45.8
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.4e-10 68.9 51 60.8
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.6e-06 55.1 40 62.5


User provided reference genes

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