Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1165 Capsella rubella HOM05D002532 ORTHO05D008197 1.2e-33 146.0 74 100.0
AT5G51610 Arabidopsis thaliana HOM05D002532 ORTHO05D008197 3.6e-19 97.8 63 76.2
A09p33350 Brassica napus HOM05D002532 ORTHO05D008197 4.8e-19 97.4 63 76.2
BraA09t38878Z Brassica rapa HOM05D002532 ORTHO05D008197 4.8e-19 97.4 63 76.2
Carub.0001s3129 Capsella rubella HOM05D002532 ORTHO05D008197 6.2e-19 97.1 63 76.2
MD14G1139900 Malus domestica HOM05D002532 ORTHO05D008197 8.1e-19 96.7 63 76.2
Potri.001G450800 Populus trichocarpa HOM05D002532 ORTHO05D008197 8.1e-19 96.7 64 78.1
AL1G47290 Arabidopsis lyrata HOM05D002532 ORTHO05D008197 1.1e-18 96.3 63 76.2
AT1G32990 Arabidopsis thaliana HOM05D002532 ORTHO05D008197 1.1e-18 96.3 63 76.2
Thhalv10008713m.g Eutrema salsugineum HOM05D002532 ORTHO05D008197 1.1e-18 96.3 63 74.6
MD06G1123700 Malus domestica HOM05D002532 ORTHO05D008197 1.1e-18 96.3 63 76.2
Nn3g18784 Nelumbo nucifera HOM05D002532 ORTHO05D008197 1.1e-18 96.3 64 76.6
Sp1g28010 Schrenkiella parvula HOM05D002532 ORTHO05D008197 1.1e-18 96.3 63 74.6
BcaC07g37574 Brassica carinata HOM05D002532 ORTHO05D008197 1.4e-18 95.9 63 74.6
CARHR151050 Cardamine hirsuta HOM05D002532 ORTHO05D008197 1.8e-18 95.5 63 73.0
Cc08_g17010 Coffea canephora HOM05D002532 ORTHO05D008197 1.8e-18 95.5 60 76.7
BcaC05g27324 Brassica carinata HOM05D002532 ORTHO05D008197 2.4e-18 95.1 63 74.6
C05p32430 Brassica napus HOM05D002532 ORTHO05D008197 2.4e-18 95.1 63 74.6
BolC5t31976H Brassica oleracea HOM05D002532 ORTHO05D008197 2.4e-18 95.1 63 74.6
Potri.011G150700 Populus trichocarpa HOM05D002532 ORTHO05D008197 2.4e-18 95.1 64 75.0
Sabra16G0304500 Salix brachista HOM05D002532 ORTHO05D008197 2.4e-18 95.1 64 76.6
THA.LOC104815429 Tarenaya hassleriana HOM05D002532 ORTHO05D008197 2.4e-18 95.1 64 73.4
A08p08790 Brassica napus HOM05D002532 ORTHO05D008197 4.0e-18 94.4 63 73.0
CDE04G2742 Ceratophyllum demersum HOM05D002532 ORTHO05D008197 5.3e-18 94.0 64 71.9
unitig_744.g24032 Utricularia gibba HOM05D002532 ORTHO05D008197 5.3e-18 94.0 64 71.9
Aa31LG6G7570 Aethionema arabicum HOM05D002532 ORTHO05D008197 6.9e-18 93.6 63 71.4
Duzib068G1233 Durio zibethinus HOM05D002532 ORTHO05D008197 6.9e-18 93.6 64 75.0
Gohir.A11G017800 Gossypium hirsutum HOM05D002532 ORTHO05D008197 6.9e-18 93.6 60 76.7
Gohir.D11G017600 Gossypium hirsutum HOM05D002532 ORTHO05D008197 6.9e-18 93.6 60 76.7
Gorai.007G018600 Gossypium raimondii HOM05D002532 ORTHO05D008197 6.9e-18 93.6 60 76.7
CDE12G0198 Ceratophyllum demersum HOM05D002532 ORTHO05D008197 9.0e-18 93.2 64 71.9
SGA_v2.0_scaffold88G27241 Striga asiatica HOM05D002532 ORTHO05D008197 9.0e-18 93.2 60 75.0
MSTRG.2034 Avicennia marina HOM05D002532 ORTHO05D008197 1.2e-17 92.8 60 75.0
CARHR032330 Cardamine hirsuta HOM05D002532 ORTHO05D008197 1.2e-17 92.8 63 71.4
Prupe.5G134200 Prunus persica HOM05D002532 ORTHO05D008197 1.2e-17 92.8 63 73.0
EL10Ac5g12396 Beta vulgaris HOM05D002532 ORTHO05D008197 1.5e-17 92.4 63 69.8
CAN.G567.110 Capsicum annuum HOM05D002532 ORTHO05D008197 1.5e-17 92.4 60 73.3
Ca_16293_v3 Cicer arietinum L. HOM05D002532 ORTHO05D008197 1.5e-17 92.4 63 74.6
Eucgr.D01648 Eucalyptus grandis HOM05D002532 ORTHO05D008197 1.5e-17 92.4 60 76.7
MBI04_g09603_MAGBIO Magnolia biondii HOM05D002532 ORTHO05D008197 1.5e-17 92.4 63 74.6
Medtr3g080800 Medicago truncatula HOM05D002532 ORTHO05D008197 1.5e-17 92.4 64 73.4
Oeu022025.1 Olea europaea HOM05D001632 ORTHO05D001534 1.5e-17 92.4 60 75.0
Peaxi162Scf00074g00020 Petunia axillaris HOM05D002532 ORTHO05D008197 1.5e-17 92.4 60 73.3
Solyc08g083350.4 Solanum lycopersicum HOM05D002532 ORTHO05D008197 1.5e-17 92.4 60 75.0
Sopen08g031560 Solanum pennellii HOM05D002532 ORTHO05D008197 1.5e-17 92.4 60 75.0
COL.COLO4_10838 Corchorus olitorius HOM05D002532 ORTHO05D008197 2.0e-17 92.0 60 75.0
QL02p027188 Quercus lobata HOM05D002532 ORTHO05D008197 2.0e-17 92.0 63 74.6
QL09p002605 Quercus lobata HOM05D002532 ORTHO05D008197 2.0e-17 92.0 63 74.6
PGSC0003DMG400012225 Solanum tuberosum HOM05D002532 ORTHO05D008197 2.0e-17 92.0 60 75.0
TPR.G21327 Trifolium pratense HOM05D002532 ORTHO05D008197 2.0e-17 92.0 64 75.0
Lalb_Chr14g0362621 Lupinus albus HOM05D002532 ORTHO05D008197 2.6e-17 91.7 60 73.3
TAR578G0001 Trochodendron aralioides HOM05D002532 ORTHO05D008197 2.6e-17 91.7 64 71.9
GSVIVG01019689001 Vitis vinifera HOM05D002532 ORTHO05D008197 2.6e-17 91.7 64 70.3
arahy.Tifrunner.gnm1.ann1.IPH7D2 Arachis hypogaea HOM05D002532 ORTHO05D008197 3.4e-17 91.3 60 73.3
arahy.Tifrunner.gnm1.ann1.TN6CXG Arachis hypogaea HOM05D002532 ORTHO05D008197 3.4e-17 91.3 60 73.3
Thecc.03G216600 Theobroma cacao HOM05D002532 ORTHO05D008197 3.4e-17 91.3 60 75.0
Actinidia22227 Actinidia chinensis HOM05D002532 ORTHO05D008197 4.5e-17 90.9 64 73.4
Aa31LG6G7550 Aethionema arabicum HOM05D002532 ORTHO05D008197 4.5e-17 90.9 63 68.3
Nitab4.5_0008664g0010 Nicotiana tabacum HOM05D002532 ORTHO05D008197 4.5e-17 90.9 60 71.7
RcHm_v2.0_Chr7g0187751 Rosa chinensis HOM05D002532 ORTHO05D008197 4.5e-17 90.9 63 73.0
ATR0661G185 Amborella trichopoda HOM05D002532 ORTHO05D008197 5.8e-17 90.5 60 73.3
Os03g0122200 Oryza sativa ssp. japonica HOM05D002532 ORTHO05D008197 5.8e-17 90.5 64 70.3
PSO063G0078 Papaver somniferum HOM05D002532 ORTHO05D008197 7.6e-17 90.1 64 73.4
PSO782G3318 Papaver somniferum HOM05D002532 ORTHO05D008197 7.6e-17 90.1 64 73.4
Manes.01G000465 Manihot esculenta HOM05D002532 ORTHO05D008197 9.9e-17 89.7 64 70.3
Sed0006934 Sechium edule HOM05D002532 ORTHO05D008197 9.9e-17 89.7 63 69.8
FAN04G0127 Fragaria x ananassa HOM05D002532 ORTHO05D008197 1.3e-16 89.4 71 66.2
FAN13G0292 Fragaria x ananassa HOM05D002532 ORTHO05D008197 1.3e-16 89.4 71 66.2
Psat5g110320 Pisum sativum HOM05D002532 ORTHO05D008197 1.3e-16 89.4 64 71.9
TWI60G0138 Tripterygium wilfordii HOM05D002532 ORTHO05D008197 1.3e-16 89.4 61 73.8
HPP92_018477 Vanilla planifolia HOM05D002532 ORTHO05D008197 1.3e-16 89.4 60 73.3
Zm00001eb001640 Zea mays HOM05D002532 ORTHO05D008197 1.3e-16 89.4 64 70.3
Atru.chr9.1843 Acer truncatum HOM05D002532 ORTHO05D008197 1.7e-16 89.0 63 69.8
MELO3C005800.2 Cucumis melo HOM05D002532 ORTHO05D008197 1.7e-16 89.0 64 68.8
FAN08G2575 Fragaria x ananassa HOM05D002532 ORTHO05D008197 1.7e-16 89.0 63 69.8
Lj6g0013288 Lotus japonicus HOM05D002532 ORTHO05D008197 1.7e-16 89.0 62 71.0
FvH4_5g10460 Fragaria vesca HOM05D002532 ORTHO05D008197 2.2e-16 88.6 63 69.8
FAN18G2603 Fragaria x ananassa HOM05D002532 ORTHO05D008197 2.2e-16 88.6 63 69.8
CiPaw.12G075500 Carya illinoinensis HOM05D000015 ORTHO05D001173 2.9e-16 88.2 60 71.7
Phvul.006G007380 Phaseolus vulgaris HOM05D002532 ORTHO05D008197 2.9e-16 88.2 60 73.3
Pp3c10_12450 Physcomitrium patens HOM05D002532 ORTHO05D008197 2.9e-16 88.2 59 72.9
SMO347G0410 Selaginella moellendorffii HOM05D002532 ORTHO05D008197 2.9e-16 88.2 62 72.6
Sc01g0010890 Simmondsia chinensis HOM05D002532 ORTHO05D008197 2.9e-16 88.2 60 71.7
CsaV3_5G001490 Cucumis sativus L. HOM05D002532 ORTHO05D008197 3.8e-16 87.8 64 68.8
Lsat_1_v5_gn_2_123641 Lactuca sativa HOM05D002532 ORTHO05D008197 3.8e-16 87.8 64 70.3
vmacro11481 Vaccinium macrocarpon HOM05D002532 ORTHO05D008197 3.8e-16 87.8 68 67.6
AUR62007082 Chenopodium quinoa HOM05D002532 ORTHO05D008197 4.9e-16 87.4 60 70.0
AUR62019945 Chenopodium quinoa HOM05D002532 ORTHO05D008197 4.9e-16 87.4 60 70.0
ClCG01G001360 Citrullus lanatus HOM05D002532 ORTHO05D008197 4.9e-16 87.4 60 70.0
Migut.E00720 Erythranthe guttata HOM05D002532 ORTHO05D008197 6.4e-16 87.0 64 68.8
Pp3c12_19370 Physcomitrium patens HOM05D002532 ORTHO05D008197 6.4e-16 87.0 59 71.2
PGR031G0783 Punica granatum HOM05D002532 ORTHO05D008197 6.4e-16 87.0 64 67.2
Cfa011892 Carpinus fangiana HOM05D002532 ORTHO05D008197 8.4e-16 86.7 63 69.8
CiPaw.11G109300 Carya illinoinensis HOM05D002532 ORTHO05D008197 8.4e-16 86.7 60 70.0
Haze_09208 Corylus avellana HOM05D002532 ORTHO05D008197 8.4e-16 86.7 63 69.8
Dinv18771 Davidia involucrata HOM05D002532 ORTHO05D008197 8.4e-16 86.7 60 71.7
HPP92_018485 Vanilla planifolia HOM05D002532 ORTHO05D008197 1.9e-15 85.5 60 71.7
CANSAT21G1421 Cannabis sativa HOM05D002532 ORTHO05D008197 2.4e-15 85.1 64 67.2
HanXRQChr14g0459431 Helianthus annuus HOM05D002532 ORTHO05D008197 2.4e-15 85.1 64 68.8
Ciclev10022134m.g Citrus clementina HOM05D002532 ORTHO05D008197 3.2e-15 84.7 60 70.0
HanXRQChr07g0203121 Helianthus annuus HOM05D002532 ORTHO05D008197 3.2e-15 84.7 64 68.8
DCAR_006568 Daucus carota HOM05D002532 ORTHO05D008197 4.2e-15 84.3 60 71.7
Glyma.01G201000 Glycine max HOM05D002532 ORTHO05D008197 4.2e-15 84.3 60 70.0
Glyma.13G000900 Glycine max HOM05D002532 ORTHO05D008197 4.2e-15 84.3 60 70.0
Hma1.2p1_0436F.1_g152860 Hydrangea macrophylla HOM05D002532 ORTHO05D008197 1.2e-14 82.8 67 62.7
Pp3c3_20370 Physcomitrium patens HOM05D002532 ORTHO05D008197 1.2e-14 82.8 59 67.8
AagrBONN_evm.TU.Sc2ySwM_117.2484 Anthoceros agrestis HOM05D002532 ORTHO05D008197 1.6e-14 82.4 70 62.9
Mapoly0003s0224 Marchantia polymorpha HOM05D002532 ORTHO05D008197 4.6e-14 80.9 59 71.2
Aqoxy5G04350 Aquilegia oxysepala HOM05D002532 ORTHO05D008197 1.0e-13 79.7 59 67.8
SEGI_00983 Sequoiadendron giganteum HOM05D002532 ORTHO05D008197 2.3e-13 78.6 58 65.5
ECA238G2753 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-11 72.0 55 65.5
C05p32440 Brassica napus HOM05D002532 ORTHO05D041531 4.8e-11 70.9 48 72.9
Hund11500 Selenicereus undatus HOM05D002532 ORTHO05D008197 2.0e-09 65.5 45 68.9
MCO12G206 Micromonas commoda HOM05D002532 ORTHO05D008197 3.2e-07 58.2 53 54.7
PRCOL_00000934 Prasinoderma coloniale HOM05D002532 ORTHO05D008197 9.3e-07 56.6 49 51.0
CBR_g23337 Chara braunii HOM05D002532 ORTHO05D008197 1.2e-06 56.2 48 56.2
CSS0024814 Camellia sinensis var. sinensis HOM05D002532 ORTHO05D008197 6.0e-06 53.9 44 61.4
TAR375G1066 Trochodendron aralioides HOM05D002532 ORTHO05D008197 7.9e-06 53.5 48 56.2


User provided reference genes

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