Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 3625.1 1867 100.0
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 3475.3 1870 95.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 3436.4 1870 94.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 3372.4 1870 92.6
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 3346.6 1871 91.9
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 3243.4 1871 89.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 3222.6 1910 87.8
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3210.2 1876 88.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3193.7 1876 88.2
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 3189.1 1877 88.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 3083.9 1870 84.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2988.0 1877 81.2
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2616.6 1881 71.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2612.8 1882 70.8
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2585.4 1879 69.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2574.7 1882 70.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2555.0 1881 69.0
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2550.8 1886 68.8
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2538.8 1884 68.3
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2536.9 1883 68.7
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2533.8 1879 68.7
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2523.4 1882 68.1
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2521.1 1882 68.2
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2518.0 1882 67.8
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2508.0 1880 67.8
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2506.5 1897 68.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2503.8 1887 68.3
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2490.7 1890 66.9
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2490.7 1912 67.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2482.6 1887 67.1
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2478.0 1887 67.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2475.3 1915 67.3
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2465.6 1882 66.7
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2462.2 1888 67.1
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2460.3 1910 67.3
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2454.9 1889 66.9
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2451.8 1892 66.7
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2450.6 1892 66.8
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2450.6 1892 66.4
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2444.5 1883 66.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2442.5 1878 66.6
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2436.8 1888 66.1
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2434.8 1892 66.0
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2422.9 1946 65.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2417.5 2016 63.7
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2403.2 1887 66.8
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2402.1 1883 64.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2399.4 1881 64.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2399.0 1879 65.6
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2392.5 1879 65.6
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2381.3 1888 64.7
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2379.0 1883 64.6
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2376.7 1882 65.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2359.3 1882 64.9
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2357.0 1883 63.6
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2351.2 1879 63.9
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2330.4 1869 64.5
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2325.4 1881 63.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2317.0 1882 63.0
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2315.8 1707 69.8
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2311.2 1893 63.6
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2305.8 1949 62.0
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2300.0 1891 63.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2295.8 1875 62.0
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2288.5 1947 62.1
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2287.7 1886 63.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2263.8 1904 61.9
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2248.4 2314 53.9
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2225.7 2015 58.3
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2222.6 1884 61.6
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2202.2 1886 60.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2197.5 1628 68.9
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2189.8 1876 61.1
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2161.0 1582 69.8
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2156.3 1921 60.0
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2134.0 1883 59.1
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2031.1 1497 69.5
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2008.0 1468 70.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1822.8 1586 59.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1815.0 1456 64.6
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1729.9 1425 62.3
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1689.5 1913 48.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1667.1 1185 70.5
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1607.0 1908 45.8
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1591.6 1901 46.2
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1567.4 1417 58.5
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1541.9 1439 56.2
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1483.0 1917 43.6
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1410.2 1876 46.4
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1353.6 1190 58.3
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1292.3 1231 54.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1267.7 1876 39.8
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1173.7 961 65.1
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1169.1 840 68.7
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1154.4 1111 57.2
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 7.2e-305 1051.6 1634 42.4
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.5e-297 1026.5 1232 46.8
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.0e-279 966.5 780 62.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 9.1e-276 954.9 1634 39.8
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.1e-260 902.9 783 57.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 7.8e-243 845.5 765 55.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.1e-235 820.8 697 62.7
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.5e-225 788.1 690 60.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 2.7e-211 740.7 1045 44.7
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.4e-193 679.5 1041 39.5
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.2e-192 677.9 1029 39.4
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 3.7e-192 677.2 601 60.2
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 2.0e-190 671.4 518 67.8
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-189 668.7 703 51.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.3e-168 599.0 512 62.3
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.5e-158 563.9 491 61.7
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 4.3e-124 451.1 400 57.0
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 4.2e-111 407.9 296 69.9
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-107 395.2 407 55.3
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.4e-105 388.3 424 53.5
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.4e-90 339.7 228 75.9
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.9e-88 331.3 210 78.1
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-87 330.1 329 56.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.8e-83 315.5 330 55.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 5.3e-82 311.2 324 53.1
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.2e-78 300.1 393 44.3
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 7.9e-78 297.4 277 55.6
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.5e-76 293.1 300 52.7
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.1e-74 287.0 311 56.3
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 6.1e-70 271.2 312 51.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.3e-69 269.2 266 59.8
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 6.9e-66 257.7 176 74.4
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.2e-59 236.1 180 65.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 8.2e-59 234.2 229 52.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 8.2e-59 234.2 229 52.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.0e-53 215.7 212 57.5
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 4.1e-50 205.3 386 37.8
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.0e-48 200.7 297 41.8
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.2e-48 199.5 216 50.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.9e-47 196.4 255 45.1
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 5.5e-47 194.9 1717 21.8
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-45 189.5 412 35.0
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 6.1e-38 164.9 402 33.1
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 5.2e-37 161.8 126 65.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.2e-35 156.4 155 60.0
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 6.3e-35 154.8 126 62.7
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.6e-31 141.7 124 58.1
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 3.6e-30 139.0 152 56.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 8.0e-30 137.9 315 29.8
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.2e-28 134.0 764 21.5
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-28 132.5 97 67.0
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 4.4e-28 132.1 77 75.3
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.7e-27 130.2 166 49.4
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-27 129.8 75 82.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-26 127.1 97 62.9
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.0e-24 120.9 117 55.6
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 4.3e-23 115.5 958 23.1
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 9.5e-23 114.4 107 55.1
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-22 113.6 147 46.3
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-22 112.8 81 71.6
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 9.2e-18 97.8 73 65.8
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.5e-17 95.9 128 40.6
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-16 92.4 56 78.6
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.3e-15 89.4 55 74.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 7.5e-12 78.2 100 50.0
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 1.3e-11 77.4 100 49.0
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.7e-11 75.9 96 46.9
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.4e-10 73.9 64 51.6
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.4e-10 73.9 46 76.1
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.9e-10 73.6 66 59.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.1e-09 70.1 37 81.1
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-09 69.7 144 36.8
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 4.6e-09 68.9 70 52.9
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 3.9e-08 65.9 78 44.9
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 5.1e-08 65.5 64 56.2
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 6.6e-08 65.1 49 61.2
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-07 64.3 43 60.5
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 7.3e-07 61.6 113 37.2
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 9.5e-07 61.2 34 76.5
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-06 60.1 44 68.2


User provided reference genes

Program Settings