Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0839 Capsella rubella HOM05D000307 ORTHO05D000166 1.2e-127 459.9 246 100.0
AT5G48670 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 1.7e-44 183.7 196 56.6
Sp3g04750 Schrenkiella parvula HOM05D000307 ORTHO05D000166 3.1e-30 136.3 165 54.5
Thhalv10022373m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.2e-28 130.2 199 46.7
Carub.0003s0523 Capsella rubella HOM05D000307 ORTHO05D000166 1.9e-27 127.1 172 48.8
CARHR119080 Cardamine hirsuta HOM05D000307 ORTHO05D000166 5.4e-27 125.6 163 47.9
SpUn0779_0010 Schrenkiella parvula HOM05D000307 ORTHO05D000166 7.1e-27 125.2 163 46.6
CARHR180810 Cardamine hirsuta HOM05D000307 ORTHO05D000166 5.1e-25 119.0 166 47.6
CARHR119540 Cardamine hirsuta HOM05D000307 ORTHO05D000166 1.1e-24 117.9 196 39.8
BcaB01g01762 Brassica carinata HOM05D000307 ORTHO05D000166 4.8e-23 112.5 166 47.0
Sp6g04880 Schrenkiella parvula HOM05D000307 ORTHO05D000166 8.1e-23 111.7 161 48.4
BraA02t07531Z Brassica rapa HOM05D000307 ORTHO05D000166 4.0e-22 109.4 197 42.6
BcaC04g21253 Brassica carinata HOM05D000307 ORTHO05D000166 9.0e-22 108.2 162 43.8
A09p26700 Brassica napus HOM05D000307 ORTHO05D000166 9.0e-22 108.2 162 43.8
C09p33810 Brassica napus HOM05D000307 ORTHO05D000166 9.0e-22 108.2 162 43.8
BolC9t56218H Brassica oleracea HOM05D000307 ORTHO05D000166 9.0e-22 108.2 162 43.8
BraA09t38241Z Brassica rapa HOM05D000307 ORTHO05D000166 9.0e-22 108.2 162 43.8
A02p25430 Brassica napus HOM05D000307 ORTHO05D000166 2.6e-21 106.7 161 46.0
Thhalv10024162m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.6e-21 106.7 193 36.8
Thhalv10019451m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.4e-19 100.9 206 43.7
Thhalv10003027m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.2e-19 99.4 166 45.8
Thhalv10023873m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 5.4e-19 99.0 161 50.3
Aa31LG5G16270 Aethionema arabicum HOM05D000307 ORTHO05D000166 1.6e-18 97.4 165 41.2
Thhalv10002789m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.6e-18 97.4 181 43.1
C02p40480 Brassica napus HOM05D000307 ORTHO05D000166 2.7e-18 96.7 139 42.4
Thhalv10012000m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.7e-18 96.7 163 48.5
Thhalv10019833m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 3.5e-18 96.3 205 35.1
Thhalv10024119m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.6e-18 95.9 164 47.6
Thhalv10019516m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 6.0e-18 95.5 218 39.0
Thhalv10002346m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-18 95.1 221 38.0
Thhalv10019579m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-18 95.1 221 38.0
Thhalv10027038m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-18 95.1 168 44.6
Thhalv10019681m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.0e-17 94.7 215 40.5
Thhalv10019810m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.0e-17 94.7 213 40.8
Thhalv10002956m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.8e-17 94.0 160 37.5
Thhalv10002996m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 5.1e-17 92.4 166 42.8
Thhalv10019731m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 5.1e-17 92.4 215 37.7
CARHR102230 Cardamine hirsuta HOM05D000307 ORTHO05D000166 1.1e-16 91.3 162 40.1
BolC2t10073H Brassica oleracea HOM05D000307 ORTHO05D000166 1.9e-16 90.5 147 45.6
SpUn0302_0010 Schrenkiella parvula HOM05D000307 ORTHO05D000166 1.9e-16 90.5 171 43.3
Thhalv10002350m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 3.3e-16 89.7 190 39.5
Thhalv10002352m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.4e-16 88.6 188 39.9
Thhalv10002353m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.4e-16 88.6 188 39.9
CARHR264270 Cardamine hirsuta HOM05D000307 ORTHO05D000166 9.6e-16 88.2 162 40.1
A05p42180 Brassica napus HOM05D000307 ORTHO05D000166 3.6e-15 86.3 191 37.2
BraA05t22937Z Brassica rapa HOM05D000307 ORTHO05D000166 3.6e-15 86.3 187 39.6
Thhalv10019667m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.4e-14 84.3 178 41.6
CARHR102130 Cardamine hirsuta HOM05D000307 ORTHO05D000166 2.4e-14 83.6 157 35.7
Thhalv10002349m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.0e-14 82.8 162 34.6
CARHR102520 Cardamine hirsuta HOM05D000307 ORTHO05D000166 4.5e-13 79.3 168 36.9
C05p61400 Brassica napus HOM05D000307 ORTHO05D000166 7.6e-13 78.6 184 39.1
BolC5t34798H Brassica oleracea HOM05D000307 ORTHO05D000166 7.6e-13 78.6 184 39.1
BcaC05g30081 Brassica carinata HOM05D000307 ORTHO05D000166 9.9e-13 78.2 184 39.1
Thhalv10019717m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.2e-12 77.0 212 37.3
Thhalv10019751m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 8.4e-12 75.1 212 38.2
Thhalv10019449m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.1e-11 74.7 62 58.1
Thhalv10019758m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.6e-10 70.9 169 38.5
AL3G16620 Arabidopsis lyrata HOM05D000307 ORTHO05D000166 3.3e-08 63.2 129 45.0
Thhalv10019660m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 3.3e-08 63.2 87 43.7
BcaC05g29774 Brassica carinata HOM05D000307 ORTHO05D000166 5.6e-08 62.4 169 32.5
Ca_17084_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 5.6e-08 62.4 44 63.6
arahy.Tifrunner.gnm1.ann1.5M65ZF Arachis hypogaea HOM05D000307 ORTHO05D000166 9.6e-08 61.6 44 65.9
arahy.Tifrunner.gnm1.ann1.TW1RKA Arachis hypogaea HOM05D000307 ORTHO05D000166 9.6e-08 61.6 44 65.9
Potri.005G002400 Populus trichocarpa HOM05D000307 ORTHO05D000166 2.8e-07 60.1 44 59.1
Medtr3g065100 Medicago truncatula HOM05D000307 ORTHO05D000166 3.7e-07 59.7 48 56.2
Lj6g0024616 Lotus japonicus HOM05D000307 ORTHO05D000166 6.2e-07 58.9 44 56.8
Psat5g119400 Pisum sativum HOM05D000307 ORTHO05D000166 1.1e-06 58.2 73 46.6
Lalb_Chr18g0053561 Lupinus albus HOM05D000307 ORTHO05D000166 1.4e-06 57.8 44 61.4
Thhalv10019692m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.0e-06 56.2 121 38.0
BolC4t26023H Brassica oleracea HOM05D000307 ORTHO05D000166 5.3e-06 55.8 57 49.1
ECA246G5209 Erigeron canadensis HOM05D000307 ORTHO05D000166 5.3e-06 55.8 45 62.2
Nitab4.5_0001463g0160 Nicotiana tabacum HOM05D000307 ORTHO05D000166 5.3e-06 55.8 42 61.9
COL.COLO4_22948 Corchorus olitorius HOM05D000307 ORTHO05D000166 6.9e-06 55.5 49 61.2
DCAR_017625 Daucus carota HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 59.1
Glyma.11G214600 Glycine max HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 56.8
Glyma.18G042000 Glycine max HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 56.8
HanXRQChr02g0058811 Helianthus annuus HOM05D000307 ORTHO05D000166 6.9e-06 55.5 45 57.8
HanXRQChr10g0296361 Helianthus annuus HOM05D000307 ORTHO05D000166 6.9e-06 55.5 45 57.8
Phvul.001G228600 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 56.8
TPR.G23204 Trifolium pratense HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 56.8
VMungo1383G0696 Vigna mungo HOM05D000307 ORTHO05D000166 6.9e-06 55.5 44 56.8
HanXRQChr15g0479321 Helianthus annuus HOM05D000307 ORTHO05D000166 9.0e-06 55.1 45 57.8
Lsat_1_v5_gn_3_36000 Lactuca sativa HOM05D000307 ORTHO05D000166 9.0e-06 55.1 45 57.8
Lsat_1_v5_gn_3_36681 Lactuca sativa HOM05D000307 ORTHO05D000166 9.0e-06 55.1 45 57.8


User provided reference genes

Program Settings