Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1815.4 927 100.0
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1700.6 926 93.6
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1689.9 925 93.0
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1647.5 929 90.3
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1642.1 925 90.6
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1609.0 917 90.0
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1581.2 926 87.1
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1574.3 926 87.0
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1574.3 926 87.0
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1488.8 931 82.8
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1439.1 935 79.0
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1376.3 935 77.6
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 0.0e+00 1278.8 808 81.3
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1240.3 944 67.8
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1180.6 939 64.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1180.2 935 64.6
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 946 63.8
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1175.2 941 63.9
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1174.1 938 63.4
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1170.2 946 64.4
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1152.9 936 62.7
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1149.4 935 62.8
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1149.4 939 62.9
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 931 63.5
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 923 63.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1143.3 941 62.1
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1139.4 934 62.1
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1137.9 934 62.1
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1134.4 934 61.9
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1132.9 934 61.8
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1132.9 934 61.9
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1128.2 938 61.0
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1127.1 933 61.8
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1125.5 933 61.7
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1112.8 935 60.6
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1109.4 933 60.8
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1105.9 932 60.7
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1102.8 934 60.7
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1099.0 930 63.0
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1092.8 944 58.9
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1092.0 933 60.9
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1088.6 933 60.9
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1087.4 937 60.3
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1084.3 925 60.1
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 937 59.6
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1082.4 931 59.9
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1078.9 937 60.1
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1078.5 919 60.9
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 6.3e-312 1074.3 934 58.9
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 2.5e-311 1072.0 934 59.9
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.6e-310 1069.3 944 58.7
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 2.8e-310 1068.5 945 59.0
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 6.3e-310 1067.4 904 60.2
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 2.9e-307 1058.5 901 59.9
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 1.6e-305 1052.7 983 58.2
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.6e-305 1052.7 936 59.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.1e-305 1052.4 942 57.1
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 8.8e-304 1047.0 988 56.3
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 1.4e-301 1039.6 941 57.9
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 2.6e-300 1035.4 937 57.4
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.7e-300 1033.9 799 65.3
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.6e-297 1026.2 930 57.0
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.0e-296 1023.5 931 55.5
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 8.8e-296 1020.4 934 56.9
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.0e-295 1019.2 942 55.6
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 5.7e-295 1017.7 929 56.4
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 3.7e-294 1015.0 943 55.4
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 8.2e-294 1013.8 932 56.5
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 5.3e-293 1011.1 932 55.7
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 7.0e-293 1010.7 929 56.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.2e-292 1010.0 932 56.0
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.0e-292 1009.2 930 57.8
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 7.7e-292 1007.3 937 55.1
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 1.7e-291 1006.1 855 60.9
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.8e-288 996.1 932 55.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.7e-286 988.4 932 54.7
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 3.7e-286 988.4 931 56.4
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 6.8e-280 967.6 936 53.8
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.0e-279 966.1 934 54.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 1.4e-277 959.9 810 60.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.2e-276 956.8 884 56.9
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 6.3e-270 934.5 945 52.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.1e-269 931.8 740 64.7
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.7e-268 929.1 922 54.1
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 6.6e-267 924.5 922 54.0
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 2.9e-262 909.1 930 52.3
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 9.2e-261 904.0 746 61.8
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.0e-255 886.3 930 50.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.3e-234 814.7 695 60.6
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 4.7e-233 812.0 683 61.5
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 5.1e-219 765.4 930 44.7
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 8.1e-209 731.5 915 44.5
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 6.7e-203 711.8 659 55.1
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 9.4e-181 638.3 935 40.2
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 2.6e-175 620.2 850 41.3
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 5.7e-170 602.4 934 37.9
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.8e-161 572.8 476 59.2
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 2.9e-150 537.0 466 62.9
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.6e-146 523.9 864 36.6
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.9e-133 481.1 745 39.3
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.2e-127 461.8 409 56.5
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 3.5e-127 460.3 910 31.5
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.9e-125 454.5 888 31.9
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.0e-122 444.5 458 54.1
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-119 434.5 443 53.0
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.6e-117 425.6 385 57.4
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.4e-85 319.7 435 44.4
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.6e-79 300.4 258 60.1
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.7e-60 237.7 183 59.6
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 7.7e-50 203.4 351 40.7
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.7e-50 203.4 366 40.2
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-39 169.1 350 34.3
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.8e-35 155.6 458 27.9
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 9.2e-35 153.3 132 61.4
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 3.6e-31 141.4 119 63.0
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.8e-30 137.1 142 50.7
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-25 122.9 121 53.7
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-23 116.3 116 55.2
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.6e-23 114.8 254 34.6
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.0e-23 113.6 73 74.0
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-22 113.2 73 74.0
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.4e-22 112.8 145 46.9
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-21 109.0 73 71.2
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-21 108.2 73 69.9
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 9.8e-21 106.7 120 50.8
MCO15G701 Micromonas commoda HOM05D004953 ORTHO05D006193 1.1e-19 103.2 914 21.1
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 5.6e-16 90.9 70 64.3
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 5.8e-13 80.9 126 39.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-12 79.7 55 65.5
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.9e-12 77.8 55 63.6
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-11 76.6 55 63.6
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.1e-11 76.6 100 42.0
BcaC06g30801 Brassica carinata HOM05D004953 ORTHO05D006193 1.9e-11 75.9 52 82.7
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.4e-11 75.5 61 50.8
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-10 73.2 61 68.9
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.5e-10 71.6 61 49.2
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.5e-10 71.6 61 55.7
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 4.6e-10 71.2 46 71.7
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 6.0e-10 70.9 61 57.4
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 3.3e-08 65.1 322 23.3
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.8e-07 62.0 38 68.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.6e-07 61.6 91 37.4
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.1e-07 60.5 38 68.4


User provided reference genes

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