Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 5.8e-62 240.7 124 97.6
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.0
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 3.8e-61 238.0 124 96.8
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 6.5e-61 237.3 124 96.0
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.1e-60 236.5 124 96.0
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 3.2e-60 235.0 124 96.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 2.1e-59 232.3 124 95.2
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.5e-57 226.1 121 92.6
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.3e-56 223.0 121 90.9
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 4.8e-56 221.1 120 94.2
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 9.0e-55 216.9 124 84.7
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 2.0e-54 215.7 121 81.8
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 2.6e-54 215.3 121 85.1
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.6e-54 215.3 124 83.9
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.4e-54 214.9 123 83.7
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 4.5e-54 214.5 124 82.3
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.8e-54 214.2 124 83.9
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.3e-53 213.0 124 83.1
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.3e-53 213.0 124 82.3
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.9e-53 211.8 124 82.3
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 2.5e-52 208.8 121 81.0
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 119 84.0
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 3.2e-52 208.4 121 82.6
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 4.2e-52 208.0 121 83.5
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 9.3e-52 206.8 120 84.2
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.6e-51 206.1 123 80.5
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 2.1e-51 205.7 111 89.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 2.1e-51 205.7 124 80.6
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 3.5e-51 204.9 123 80.5
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 4.6e-51 204.5 121 81.8
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 6.1e-51 204.1 125 81.6
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 7.9e-51 203.8 123 80.5
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 7.9e-51 203.8 121 81.8
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 1.0e-50 203.4 121 80.2
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 1.3e-50 203.0 124 79.8
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-50 203.0 120 80.8
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 81.5
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 81.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 82.4
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 78.9
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 2.3e-50 202.2 121 79.3
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 81.5
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 3.0e-50 201.8 123 78.9
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.9e-50 201.4 120 79.2
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 3.9e-50 201.4 123 78.9
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.1e-50 201.1 120 79.2
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.1e-50 201.1 120 79.2
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 5.1e-50 201.1 123 76.4
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 8.7e-50 200.3 121 80.2
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.1e-49 199.9 121 78.5
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.1e-49 199.9 152 68.4
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.1e-49 199.9 121 80.2
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.1e-49 199.9 121 80.2
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-49 199.5 109 88.1
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.9e-49 199.1 120 77.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.9e-49 199.1 123 77.2
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.9e-49 199.1 121 77.7
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.5e-49 198.7 121 80.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 3.3e-49 198.4 121 76.0
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 121 78.5
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 121 79.3
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 4.3e-49 198.0 119 80.7
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 4.3e-49 198.0 121 78.5
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 5.7e-49 197.6 121 78.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.4e-49 197.2 120 76.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.4e-49 197.2 120 76.7
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 7.4e-49 197.2 119 76.5
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 9.7e-49 196.8 120 77.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 9.7e-49 196.8 124 76.6
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 76.4
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-48 196.4 120 77.5
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.2e-48 195.7 121 78.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.8e-48 195.3 121 77.7
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.8e-48 195.3 120 75.8
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.8e-48 195.3 119 82.4
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 4.8e-48 194.5 120 77.5
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.3e-48 194.1 120 75.0
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 8.2e-48 193.7 119 74.8
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.1e-47 193.4 124 76.6
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.1e-47 193.4 120 75.0
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.4e-47 192.2 125 75.2
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.4e-47 192.2 125 75.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 6.9e-47 190.7 124 77.4
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 6.9e-47 190.7 124 71.0
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 9.0e-47 190.3 121 75.2
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.2e-46 189.9 123 71.5
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.5e-46 189.5 122 73.0
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.0e-46 189.1 123 70.7
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 3.4e-46 188.3 123 69.1
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 7.7e-46 187.2 124 74.2
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.0e-45 186.8 124 74.2
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 6.5e-45 184.1 123 72.4
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 8.5e-45 183.7 120 75.8
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.1e-44 183.3 124 69.4
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.4e-44 183.0 123 72.4
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.5e-44 182.2 120 74.2
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.2e-44 181.4 125 75.2
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 4.2e-44 181.4 107 88.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.2e-43 179.9 120 70.0
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.2e-43 179.9 119 72.3
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.6e-43 179.5 124 66.9
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.7e-43 178.7 123 72.4
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 3.6e-43 178.3 111 82.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 6.1e-43 177.6 129 64.3
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 7.9e-43 177.2 124 68.5
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 6.7e-42 174.1 120 66.7
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 9.7e-41 170.2 124 66.1
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.8e-40 168.7 124 66.1
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 2.8e-40 168.7 123 65.0
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 3.7e-40 168.3 121 68.6
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 4.8e-40 167.9 124 65.3
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.3e-40 167.5 121 71.1
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.3e-40 167.5 121 71.1
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 8.2e-40 167.2 119 70.6
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 5.9e-38 161.0 122 69.7
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 7.7e-38 160.6 121 66.9
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.0e-37 160.2 123 63.4
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 5.0e-37 157.9 100 74.0
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 7.2e-36 154.1 121 61.2
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 1.4e-34 149.8 122 63.9
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.1e-34 147.9 95 74.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 4.4e-33 144.8 116 55.2
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.1e-31 138.3 83 75.9
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 5.9e-30 134.4 82 86.6
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.7e-29 132.9 121 58.7
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 4.2e-28 128.3 68 92.6
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 8.0e-27 124.0 120 53.3
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 2.3e-26 122.5 100 66.0
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 2.3e-26 122.5 88 68.2
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.0e-26 121.7 121 57.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 2.6e-25 119.0 115 53.9
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-24 116.7 83 69.9
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-23 113.6 62 88.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.1e-23 113.6 62 91.9
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-21 105.9 93 55.9
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.8e-21 105.1 60 83.3
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.2e-20 102.1 88 60.2
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 6.8e-18 94.4 78 61.5
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 3.7e-16 88.6 104 54.8
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.1e-15 87.0 61 67.2
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 4.5e-14 81.6 43 93.0
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.7e-08 63.2 107 34.6
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 8.3e-08 60.8 39 69.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.1e-07 60.5 111 34.2
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 7.7e-06 54.3 54 57.4


User provided reference genes

Program Settings