Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.4e-128 463.0 236 100.0
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 3.5e-100 368.6 251 82.5
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 1.6e-97 359.8 258 79.8
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.4e-80 302.8 247 69.6
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.4e-80 302.8 247 69.6
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 1.9e-77 293.1 245 70.6
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 8.2e-73 277.7 243 67.1
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 8.2e-73 277.7 243 67.1
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.1e-72 275.8 246 67.1
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 7.7e-71 271.2 243 66.7
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 1.3e-70 270.4 248 65.7
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.8e-65 252.7 246 64.2
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.1e-64 249.2 234 63.2
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 9.1e-64 247.7 231 62.3
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 5.5e-61 238.4 235 62.1
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 5.5e-61 238.4 235 62.1
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.2e-60 237.3 237 62.0
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 1.1e-56 224.2 234 60.7
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 3.5e-55 219.2 242 58.3
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 2.7e-52 209.5 219 59.8
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.3e-41 174.1 254 48.4
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 4.4e-34 149.1 249 41.8
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.9e-30 136.0 258 45.0
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.9e-30 136.0 228 42.1
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 9.8e-26 121.3 205 41.5
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.9e-25 119.0 237 39.7
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.4e-24 117.5 243 37.0
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.9e-24 117.1 246 37.4
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 4.1e-24 115.9 202 39.1
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 9.2e-24 114.8 216 40.3
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.6e-23 114.0 212 39.6
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 2.0e-23 113.6 221 39.4
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.0e-23 112.1 228 34.6
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 6.0e-23 112.1 216 39.8
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.3e-22 110.9 235 37.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.3e-22 110.2 232 39.2
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 3.0e-22 109.8 259 38.2
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.6e-22 108.6 229 36.2
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 8.6e-22 108.2 210 37.6
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.9e-21 107.1 240 38.3
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 2.5e-21 106.7 207 41.5
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 5.6e-21 105.5 202 39.6
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 5.6e-21 105.5 230 37.8
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 7.3e-21 105.1 212 40.1
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.2e-20 104.4 207 37.7
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.6e-20 104.0 239 34.7
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 3.6e-20 102.8 233 37.3
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.6e-20 102.8 243 37.4
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 8.1e-20 101.7 238 36.1
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-19 101.3 206 35.9
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.8e-19 100.5 230 37.4
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.3e-19 100.1 180 40.0
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.1e-19 99.8 239 34.3
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.0e-19 99.4 223 34.5
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.8e-19 98.6 230 37.0
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 6.8e-19 98.6 255 35.7
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 6.8e-19 98.6 233 36.9
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 2.0e-18 97.1 194 34.5
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.0e-18 97.1 229 34.1
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.6e-18 96.7 236 36.0
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 5.8e-18 95.5 190 37.9
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.8e-18 95.5 180 38.9
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 5.8e-18 95.5 258 32.6
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.8e-18 95.5 205 35.6
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 9.8e-18 94.7 192 35.9
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 9.8e-18 94.7 207 34.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.2e-17 93.6 218 33.5
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 2.2e-17 93.6 203 36.0
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.2e-17 93.6 239 33.1
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 2.9e-17 93.2 191 36.6
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 3.7e-17 92.8 203 36.0
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.9e-17 92.4 177 40.7
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 6.4e-17 92.0 185 36.2
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 6.4e-17 92.0 205 35.1
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 6.4e-17 92.0 191 36.1
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 1.1e-16 91.3 208 36.1
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-16 91.3 190 36.8
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.4e-16 90.9 210 35.7
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.9e-16 90.5 195 36.9
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 1.9e-16 90.5 173 36.4
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.9e-16 90.5 192 39.1
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 3.2e-16 89.7 190 38.4
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 7.1e-16 88.6 193 37.3
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.1e-16 88.6 194 36.6
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 9.2e-16 88.2 220 34.1
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 9.2e-16 88.2 210 35.2
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-15 87.8 192 36.5
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.6e-15 87.4 175 36.0
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.1e-15 87.0 207 34.3
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-15 87.0 178 37.1
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.7e-15 86.7 206 35.4
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 3.5e-15 86.3 227 33.5
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 3.5e-15 86.3 197 33.0
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 3.5e-15 86.3 177 33.9
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 6.0e-15 85.5 204 32.4
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.0e-14 84.7 193 34.7
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.0e-14 83.2 231 31.6
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.0e-14 83.2 231 31.6
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 3.0e-14 83.2 194 33.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 6.6e-14 82.0 210 31.9
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.6e-14 82.0 192 35.9
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.1e-13 81.3 193 33.2
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.9e-13 80.5 225 31.1
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.9e-13 80.5 198 34.8
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 3.3e-13 79.7 205 34.6
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 3.3e-13 79.7 211 35.5
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 7.3e-13 78.6 229 31.0
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 7.3e-13 78.6 158 32.3
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 9.5e-13 78.2 242 31.8
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.2e-12 77.8 249 33.7
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.6e-12 77.4 258 29.8
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 2.1e-12 77.0 177 33.3
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 3.6e-12 76.3 170 35.9
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.7e-12 75.9 195 31.3
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 6.2e-12 75.5 215 33.5
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 8.1e-12 75.1 175 34.3
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 1.8e-11 73.9 205 32.7
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.8e-11 73.9 173 32.4
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.1e-11 73.2 203 33.5
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.2e-10 71.2 153 35.9
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 2.0e-10 70.5 222 30.6
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.6e-10 70.1 195 30.8
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.6e-10 70.1 226 33.6
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.6e-10 70.1 194 30.9
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 2.6e-10 70.1 135 35.6
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.6e-10 70.1 215 31.6
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.4e-10 69.3 203 32.5
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 5.8e-10 68.9 211 31.3
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 5.8e-10 68.9 180 31.1
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.6e-10 68.6 194 33.5
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 7.6e-10 68.6 226 29.6
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 9.9e-10 68.2 252 31.7
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 9.9e-10 68.2 200 33.5
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 1.3e-09 67.8 165 31.5
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.7e-09 67.4 208 31.7
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 2.2e-09 67.0 197 31.5
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 2.9e-09 66.6 227 31.7
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-09 66.6 150 35.3
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 3.7e-09 66.2 93 44.1
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 4.9e-09 65.9 158 33.5
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 6.4e-09 65.5 190 33.7
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.1e-08 64.7 222 29.7
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.4e-08 64.3 134 33.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.4e-08 63.5 214 29.4
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.4e-08 63.5 232 30.6
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.1e-08 62.8 224 28.6
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 7.1e-08 62.0 139 32.4
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 7.1e-08 62.0 191 29.3
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 1.2e-07 61.2 215 30.2
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.6e-07 60.8 193 28.0
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 2.1e-07 60.5 88 42.0
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 2.7e-07 60.1 227 29.1
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 3.5e-07 59.7 187 27.3
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 6.0e-07 58.9 160 30.0
A01p04400 Brassica napus HOM05D009953 ORTHO05D003195 7.8e-07 58.5 164 31.7
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 1.3e-06 57.8 244 27.9
C01p04800 Brassica napus HOM05D009953 ORTHO05D003195 1.7e-06 57.4 127 34.6
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 2.3e-06 57.0 215 30.2
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.0e-06 56.6 77 44.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 5.1e-06 55.8 84 41.7
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 6.6e-06 55.5 101 38.6
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 6.6e-06 55.5 101 38.6
Zm00001eb027960 Zea mays HOM05D003792 ORTHO05D003195 6.6e-06 55.5 197 27.4
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 8.6e-06 55.1 118 34.7
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 8.6e-06 55.1 220 30.5


User provided reference genes

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