Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 7.8e-217 756.9 398 100.0
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 4.4e-212 741.1 398 97.2
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 1.7e-211 739.2 398 97.0
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 4.1e-210 734.6 398 96.5
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 8.6e-208 726.9 398 95.5
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 1.4e-205 719.5 398 94.0
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 6.8e-205 717.2 398 93.7
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 6.8e-205 717.2 398 93.7
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 3.4e-204 714.9 398 93.7
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 3.4e-204 714.9 398 93.7
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 3.4e-204 714.9 398 93.7
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 3.4e-204 714.9 398 93.5
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 4.9e-203 711.1 398 93.2
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 4.9e-203 711.1 398 93.2
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 4.9e-203 711.1 398 93.2
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 6.4e-203 710.7 398 93.7
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 1.1e-202 709.9 398 93.2
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 1.1e-202 709.9 398 93.2
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 4.1e-202 708.0 398 93.0
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.5e-201 704.9 399 92.5
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 1.2e-198 696.4 398 90.7
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 3.6e-190 668.3 398 86.4
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 4.4e-188 661.4 398 85.4
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 7.6e-188 660.6 398 85.7
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 2.2e-187 659.1 398 85.9
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 3.8e-187 658.3 398 84.9
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 4.9e-187 657.9 398 85.2
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 4.9e-187 657.9 398 84.7
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 6.4e-187 657.5 398 85.7
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 8.4e-187 657.1 398 85.2
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.1e-186 656.8 398 84.4
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 1.1e-186 656.8 398 84.7
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.4e-186 655.6 398 84.9
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 2.4e-186 655.6 398 84.9
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 4.2e-186 654.8 398 84.9
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.4e-186 654.4 398 85.2
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 5.4e-186 654.4 398 84.9
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 5.4e-186 654.4 397 84.1
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 5.4e-186 654.4 398 85.2
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 9.3e-186 653.7 398 84.2
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 1.6e-185 652.9 398 84.7
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 2.1e-185 652.5 398 84.7
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 2.1e-185 652.5 398 84.2
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 2.7e-185 652.1 398 83.9
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 3.5e-185 651.7 398 85.2
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 3.5e-185 651.7 398 84.4
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 4.6e-185 651.4 398 84.4
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 4.6e-185 651.4 398 83.9
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 7.8e-185 650.6 398 84.2
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 7.8e-185 650.6 398 84.4
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 7.8e-185 650.6 398 84.2
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 1.0e-184 650.2 398 83.7
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.3e-184 649.8 398 84.4
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 1.7e-184 649.4 398 83.7
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.0e-184 648.7 398 84.7
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 3.0e-184 648.7 398 83.9
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 3.9e-184 648.3 398 83.7
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 3.9e-184 648.3 398 83.9
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 6.6e-184 647.5 398 83.9
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 6.6e-184 647.5 398 83.7
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 8.7e-184 647.1 400 83.5
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 1.5e-183 646.4 398 83.4
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 3.3e-183 645.2 398 84.2
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 7.3e-183 644.0 401 84.0
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.6e-182 642.9 398 82.7
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.6e-182 642.9 398 82.7
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 2.1e-182 642.5 398 83.2
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 2.1e-182 642.5 398 83.4
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 2.1e-182 642.5 398 83.9
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 2.8e-182 642.1 398 83.4
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 2.8e-182 642.1 398 83.4
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 4.8e-182 641.3 403 82.4
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 4.8e-182 641.3 398 83.9
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 4.8e-182 641.3 398 82.4
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 1.4e-181 639.8 398 82.9
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 82.4
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 82.9
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 2.4e-181 639.0 399 83.2
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 6.9e-181 637.5 399 82.7
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 6.9e-181 637.5 399 82.7
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 9.0e-181 637.1 398 82.9
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 9.0e-181 637.1 398 82.4
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 2.0e-180 636.0 398 81.9
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.0e-180 636.0 399 82.5
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 3.4e-180 635.2 398 83.2
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.8e-179 631.7 399 82.2
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 1.4e-178 629.8 398 81.4
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.2e-177 626.7 398 80.7
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 2.1e-177 625.9 398 80.4
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 2.7e-177 625.5 440 75.5
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 3.5e-177 625.2 398 80.9
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.8e-176 622.9 398 82.4
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 6.7e-176 620.9 406 79.1
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 5.6e-175 617.8 477 70.6
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 4.8e-174 614.8 392 81.4
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 1.5e-172 609.8 402 79.1
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 1.5e-172 609.8 501 67.3
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 3.8e-171 605.1 398 80.2
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.1e-170 603.6 490 68.2
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 4.2e-170 601.7 398 79.4
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 3.5e-169 598.6 398 78.6
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 1.3e-168 596.7 355 85.9
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 8.7e-168 594.0 398 77.6
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 2.5e-167 592.4 398 77.4
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 5.6e-167 591.3 398 78.4
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 9.6e-167 590.5 398 74.1
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 8.2e-166 587.4 418 75.6
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 8.2e-166 587.4 437 73.5
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.5e-164 583.2 439 72.7
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 3.4e-164 582.0 353 85.0
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 3.4e-164 582.0 377 80.6
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 3.4e-164 582.0 431 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 6.5e-163 577.8 397 72.5
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 2.1e-161 572.8 395 73.4
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 7.9e-161 570.9 395 72.7
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 2.5e-159 565.8 353 82.4
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 2.0e-156 556.2 387 76.5
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 1.9e-146 523.1 398 71.9
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 3.0e-144 515.8 395 66.3
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 1.2e-140 503.8 398 69.1
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 3.5e-132 475.7 347 71.5
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.2e-131 473.0 419 62.8
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 5.3e-125 451.8 271 85.2
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 4.1e-117 425.6 312 72.4
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 2.2e-110 403.3 393 53.4
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 6.1e-105 385.2 229 86.5
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.2e-103 380.9 402 50.2
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 5.2e-96 355.5 216 84.3
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 4.3e-90 335.9 404 47.8
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 1.1e-82 311.2 213 74.6
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 9.3e-77 291.6 214 71.5
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 5.3e-64 249.2 146 92.5
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 5.8e-63 245.7 150 84.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.9e-61 240.7 150 82.0
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.7e-57 226.5 358 38.0
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.5e-50 204.5 183 65.0
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 1.2e-39 168.3 203 46.3
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 8.5e-38 162.2 243 46.5
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 2.8e-33 147.1 94 79.8
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.8e-33 147.1 94 79.8
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 6.5e-14 82.8 49 75.5
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 4.2e-13 80.1 66 66.7
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 5.4e-08 63.2 42 73.8
ECA240G1489 Erigeron canadensis HOM05D001185 ORTHO05D003777 2.0e-07 61.2 328 23.5
CsaV3_2G017820 Cucumis sativus L. HOM05D001185 ORTHO05D003777 2.2e-06 57.8 335 21.8


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