Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.0e-124 449.1 235 100.0
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 8.7e-91 337.4 241 79.7
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 7.1e-85 317.8 238 72.3
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 3.9e-83 312.0 237 70.9
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 1.6e-81 306.6 239 70.3
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.1e-80 303.9 245 68.2
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.1e-80 303.9 242 68.6
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 1.7e-78 296.6 238 69.3
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.1e-77 293.9 237 68.4
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 1.1e-74 283.9 237 67.9
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 2.5e-74 282.7 240 66.7
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 2.5e-74 282.7 239 67.4
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 2.5e-74 282.7 239 67.4
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 2.5e-74 282.7 239 67.4
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 5.7e-74 281.6 214 71.5
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 2.4e-72 276.2 216 70.4
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 8.4e-70 267.7 218 72.5
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 1.1e-64 250.8 216 66.7
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 6.5e-62 241.5 237 57.4
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 9.7e-58 227.6 211 60.2
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 3.1e-48 196.1 229 49.8
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 5.9e-47 191.8 269 43.9
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 8.3e-33 144.8 201 44.8
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 2.4e-32 143.3 201 44.3
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 3.1e-32 142.9 205 42.4
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 7.0e-32 141.7 206 43.2
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 5.9e-31 138.7 206 41.3
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.0e-30 137.9 200 41.5
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 4.2e-29 132.5 236 40.3
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 4.2e-29 132.5 229 41.0
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 5.5e-29 132.1 206 41.7
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 7.2e-29 131.7 188 43.6
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 2.1e-28 130.2 209 39.7
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 2.1e-28 130.2 224 37.9
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 2.7e-28 129.8 215 41.4
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 2.7e-28 129.8 218 41.7
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 3.6e-28 129.4 209 41.1
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.4e-27 127.5 202 40.1
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.4e-27 127.5 165 47.3
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-27 126.7 220 38.6
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.0e-27 126.3 232 35.8
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-26 124.4 220 38.2
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.5e-26 124.0 203 39.4
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 2.0e-26 123.6 210 41.9
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 4.4e-26 122.5 217 39.2
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 7.5e-26 121.7 235 35.3
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 9.8e-26 121.3 185 39.5
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.3e-25 120.9 200 38.5
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 1.7e-25 120.6 216 38.0
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.7e-25 120.6 188 42.6
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 2.8e-25 119.8 193 39.9
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 2.8e-25 119.8 241 36.9
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 1.1e-24 117.9 238 35.3
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.1e-24 116.3 194 38.1
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 3.1e-24 116.3 209 37.3
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.1e-24 116.3 204 39.2
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 7.0e-24 115.2 241 35.7
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 7.0e-24 115.2 148 50.0
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 7.0e-24 115.2 189 41.8
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.6e-23 114.0 168 41.1
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 2.0e-23 113.6 195 36.4
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 2.7e-23 113.2 219 39.3
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 7.7e-23 111.7 198 36.9
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 7.7e-23 111.7 181 41.4
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 7.7e-23 111.7 222 35.1
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 1.0e-22 111.3 190 37.4
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.7e-22 110.5 195 39.0
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.3e-22 110.2 204 39.2
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 2.3e-22 110.2 217 35.5
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 2.9e-22 109.8 189 37.0
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 2.9e-22 109.8 177 40.1
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 8.6e-22 108.2 206 35.0
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.1e-21 107.8 241 34.0
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.5e-21 107.5 203 39.4
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.5e-21 107.5 182 39.0
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 1.9e-21 107.1 187 36.4
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 3.3e-21 106.3 240 35.4
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 3.3e-21 106.3 204 36.3
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 5.6e-21 105.5 193 38.3
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 5.6e-21 105.5 192 37.5
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 5.6e-21 105.5 185 39.5
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 7.3e-21 105.1 203 36.9
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 7.3e-21 105.1 205 36.6
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 9.5e-21 104.8 253 34.4
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 9.5e-21 104.8 205 36.1
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 1.2e-20 104.4 217 36.9
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.8e-20 103.2 204 34.8
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 8.0e-20 101.7 208 36.1
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.6e-18 96.7 176 37.5
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.6e-18 96.7 205 34.6
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 5.7e-18 95.5 190 34.2
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 1.3e-17 94.4 184 34.8
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.8e-16 90.5 205 35.1
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.6e-15 87.4 157 39.5
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.0e-14 84.7 90 57.8
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.7e-14 84.0 149 38.3
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 3.0e-14 83.2 240 29.6
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 4.3e-13 79.3 197 34.0
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 9.5e-13 78.2 159 35.2
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.2e-12 77.8 254 31.1
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 2.8e-12 76.6 111 40.5
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.4e-11 74.3 255 30.6
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 8.9e-11 71.6 90 46.7
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 9.8e-10 68.2 237 30.0
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.0e-06 58.2 116 29.3


User provided reference genes

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