Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 7.6e-168 594.0 348 100.0
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 7.2e-142 507.7 352 86.1
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.2e-141 506.9 349 85.4
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.4e-137 492.7 352 84.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.4e-137 492.7 352 84.4
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-136 489.2 352 84.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 7.7e-136 487.6 352 84.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 6.1e-133 478.0 349 84.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 6.1e-133 478.0 352 81.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 8.8e-132 474.2 350 84.6
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.4e-129 466.1 355 81.7
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.4e-129 466.1 355 81.7
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-128 463.8 356 82.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.7e-128 462.6 356 81.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.1e-126 457.2 354 81.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.3e-119 433.7 344 72.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.7e-115 418.3 352 73.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 9.2e-113 411.0 352 75.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.2e-105 386.0 343 73.2
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 5.4e-105 385.2 336 66.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-94 350.9 339 63.1
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.3e-94 349.4 339 63.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.6e-93 347.1 335 58.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.8e-93 346.3 338 55.6
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.6e-93 345.9 304 61.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.6e-93 345.9 328 61.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.8e-92 343.6 335 57.3
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.3e-92 343.2 336 57.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.3e-92 343.2 338 58.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 4.0e-92 342.4 312 63.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 8.9e-92 341.3 339 61.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.2e-91 340.9 349 59.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.5e-91 340.5 339 54.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.8e-91 338.6 340 55.0
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 9.8e-91 337.8 323 56.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.2e-90 336.7 318 60.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.9e-89 333.6 336 64.9
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 5.4e-89 332.0 268 69.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 7.1e-89 331.6 284 64.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.6e-88 330.5 316 63.0
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.6e-88 330.5 276 69.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 2.7e-88 329.7 344 54.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.7e-88 329.7 327 56.0
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 3.5e-88 329.3 316 60.1
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.0e-88 328.6 317 63.4
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 6.0e-88 328.6 320 60.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.3e-87 327.4 336 58.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.7e-87 327.0 315 59.4
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.3e-87 326.6 313 62.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.1e-87 325.5 286 64.3
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 6.6e-87 325.1 269 64.3
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 8.6e-87 324.7 360 61.1
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.5e-86 323.2 342 56.4
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.3e-86 322.8 302 57.9
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 9.5e-86 321.2 300 60.3
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.2e-85 320.9 272 62.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.1e-85 320.1 350 56.0
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.6e-85 319.3 319 62.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 4.7e-85 318.9 332 57.5
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 6.2e-85 318.5 325 59.1
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 6.2e-85 318.5 325 55.7
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 6.2e-85 318.5 323 60.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 8.1e-85 318.2 309 55.7
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.1e-84 317.8 271 59.8
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.1e-84 317.8 312 59.9
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.1e-84 317.8 342 53.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 2.3e-84 316.6 271 61.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.1e-84 316.2 267 64.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.0e-84 315.8 279 68.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 6.8e-84 315.1 294 65.6
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.8e-84 315.1 317 59.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.2e-83 314.3 300 65.3
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.5e-83 313.9 332 50.9
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 4.4e-83 312.4 231 67.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.6e-83 311.6 229 68.1
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.7e-82 310.5 301 60.8
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.4e-82 308.5 316 56.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.7e-79 300.4 309 58.9
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.7e-79 300.4 323 57.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.5e-78 296.6 256 59.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.2e-77 294.3 234 63.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.6e-77 293.9 297 55.2
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.7e-77 292.4 255 59.6
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.4e-76 290.0 299 63.9
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 5.2e-76 288.9 255 59.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.5e-75 287.3 329 54.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.0e-75 287.0 311 60.8
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.0e-75 287.0 311 60.8
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.4e-75 286.2 285 62.8
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 5.8e-75 285.4 304 54.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 5.8e-75 285.4 281 58.0
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.6e-75 285.0 311 60.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.7e-74 283.9 264 57.2
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.9e-74 283.1 266 62.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 8.4e-74 281.6 301 53.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.4e-73 280.8 305 56.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.9e-73 280.4 258 58.1
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.4e-73 280.0 229 61.6
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.1e-72 276.9 301 51.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.5e-72 276.2 383 46.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 7.8e-72 275.0 330 56.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.3e-71 274.2 331 52.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.3e-71 273.5 315 57.5
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 5.1e-71 272.3 314 56.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.7e-71 271.6 253 60.1
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.2e-67 261.2 321 51.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.1e-65 254.6 265 58.9
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.6e-62 242.3 162 69.8
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 6.9e-60 235.3 264 50.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 8.4e-58 228.4 233 50.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.9e-57 227.3 332 44.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.2e-57 226.5 283 53.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 9.6e-54 214.9 191 53.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.3e-52 209.1 135 73.3
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-49 201.4 321 39.6
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.9e-49 200.7 266 47.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.4e-44 183.7 135 63.0
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 3.1e-44 183.3 352 43.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.6e-40 171.0 147 62.6
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.4e-35 153.3 177 42.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.3e-34 151.4 315 32.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.5e-33 147.1 90 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.5e-33 147.1 92 78.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 9.4e-33 145.2 250 37.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.8e-31 141.0 174 46.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 3.7e-21 106.7 196 31.6
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.7e-21 106.7 65 78.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-20 105.1 210 28.1
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.4e-20 104.8 152 54.6
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.4e-17 92.0 144 41.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.5e-14 82.4 187 29.4
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.0e-12 75.9 191 27.2
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.7e-11 73.9 121 34.7
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 4.5e-11 73.2 228 25.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.2e-09 67.0 83 44.6
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 3.6e-08 63.5 96 30.2
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 4.7e-08 63.2 84 46.4


User provided reference genes

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