Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 5.9e-302 1040.0 514 100.0
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 1.2e-257 892.9 514 86.6
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 8.7e-245 850.1 527 80.8
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 3.8e-240 834.7 527 79.7
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 2.5e-239 832.0 525 79.6
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 4.2e-239 831.2 525 79.2
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.6e-238 829.3 526 79.7
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.6e-238 829.3 525 79.4
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 2.1e-238 828.9 525 79.2
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.0e-237 826.6 525 79.4
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 9.4e-223 776.9 523 76.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 1.5e-204 716.5 536 68.8
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 2.0e-196 689.5 543 66.9
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 6.1e-190 667.9 375 86.1
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 1.7e-168 596.7 379 77.8
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 1.1e-146 524.2 546 51.1
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 7.9e-145 518.1 528 52.3
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 3.6e-142 509.2 559 49.4
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 1.4e-141 507.3 536 50.7
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.8e-141 506.9 511 51.9
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 7.9e-137 491.5 511 50.3
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 4.3e-135 485.7 525 49.0
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 4.8e-134 482.3 503 50.7
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 4.0e-133 479.2 532 48.3
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 4.5e-132 475.7 502 50.4
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.0e-131 474.6 526 48.5
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 2.9e-131 473.0 502 50.4
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 1.1e-130 471.1 520 48.1
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.0e-128 463.0 531 46.9
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.7e-128 461.8 547 45.9
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 4.3e-127 459.1 534 45.7
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 7.4e-127 458.4 543 46.4
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 6.9e-125 451.8 533 46.3
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 2.6e-124 449.9 520 47.1
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 7.6e-124 448.4 542 45.8
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 7.6e-124 448.4 535 46.9
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 1.7e-123 447.2 535 46.5
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 8.4e-123 444.9 545 44.2
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.9e-122 443.7 474 50.6
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 1.2e-121 441.0 571 43.8
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.2e-121 441.0 506 48.0
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 2.7e-121 439.9 514 45.7
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 6.1e-121 438.7 496 47.2
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 6.1e-121 438.7 544 45.6
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.0e-120 438.0 426 53.5
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 2.3e-120 436.8 537 45.3
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.5e-119 434.1 533 43.9
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 1.9e-119 433.7 539 44.3
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 1.6e-118 430.6 534 43.8
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 4.8e-118 429.1 543 44.2
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 2.0e-116 423.7 588 41.8
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 3.4e-116 422.9 535 44.5
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 5.9e-116 422.2 507 45.8
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 6.5e-115 418.7 508 45.7
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 7.2e-114 415.2 491 48.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 9.4e-114 414.8 528 43.8
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.7e-113 413.3 534 44.2
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.7e-113 413.3 481 46.6
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 6.1e-113 412.1 526 44.3
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.4e-112 411.0 516 44.4
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 2.3e-112 410.2 599 41.2
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 1.5e-111 407.5 474 47.9
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 3.3e-111 406.4 434 49.1
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 7.4e-111 405.2 492 46.1
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 4.1e-109 399.4 609 39.4
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.3e-107 394.4 391 52.7
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 2.5e-106 390.2 395 50.9
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.1e-104 382.5 407 47.9
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 4.8e-102 375.9 457 44.9
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 6.3e-102 375.6 691 36.0
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 1.8e-101 374.0 562 39.1
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 2.0e-100 370.5 423 47.5
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.7e-99 367.5 428 45.1
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 6.5e-99 365.5 476 45.0
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 8.5e-99 365.2 465 44.5
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.1e-98 364.8 428 48.4
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.6e-97 360.9 423 46.6
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 6.1e-97 359.0 530 39.1
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 2.6e-95 353.6 364 50.0
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 9.7e-95 351.7 532 38.2
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.7e-94 350.9 509 42.2
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.4e-93 347.8 392 48.2
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 5.0e-91 339.3 572 38.1
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 6.5e-91 339.0 426 44.8
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 7.2e-90 335.5 373 49.3
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 1.0e-88 331.6 562 37.2
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.4e-88 331.3 392 45.9
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 4.4e-87 326.2 398 46.2
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 5.4e-85 319.3 441 42.0
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.9e-82 310.8 377 45.6
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 8.3e-78 295.4 379 41.4
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.0e-75 288.5 376 42.6
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 2.1e-65 254.2 281 49.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 7.5e-63 245.7 308 44.5
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 1.5e-55 221.5 325 38.2
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 4.1e-53 213.4 233 49.4
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.2e-52 211.8 217 49.8
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 2.7e-52 210.7 501 30.3
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 4.7e-49 199.9 498 27.3
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 4.6e-36 156.8 222 38.3
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 6.6e-35 152.9 275 37.1
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.6e-33 148.3 371 30.2
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 7.1e-29 132.9 201 38.8
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 3.9e-27 127.1 259 30.5
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 4.5e-23 113.6 207 29.5
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 2.6e-15 87.8 150 37.3
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.7e-14 85.1 169 36.1
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 3.0e-11 74.3 145 34.5
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.1e-10 72.4 122 36.1
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.9e-10 71.6 110 37.3
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 4.8e-09 67.0 93 36.6
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.1e-08 63.9 64 43.8


User provided reference genes

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