Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 9.2e-90 333.6 173 100.0
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 2.1e-78 295.8 179 87.2
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 3.8e-75 285.0 182 82.4
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 1.6e-73 279.6 188 79.8
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 1.9e-71 272.7 182 78.6
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.9e-66 256.1 182 74.2
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 5.4e-66 254.6 195 71.3
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 5.6e-63 244.6 183 74.3
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 2.0e-60 236.1 183 72.7
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 4.5e-60 235.0 201 65.7
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 5.5e-58 228.0 211 64.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.4e-53 213.4 137 83.2
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 3.4e-52 208.8 184 66.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 4.5e-52 208.4 186 63.4
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 4.5e-52 208.4 186 63.4
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 4.2e-50 201.8 192 58.3
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 6.1e-49 198.0 188 59.0
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 7.9e-49 197.6 187 60.4
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 3.9e-48 195.3 191 59.7
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 8.7e-48 194.1 186 61.3
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.1e-47 193.7 186 60.8
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 2.5e-47 192.6 192 56.8
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 2.5e-47 192.6 192 57.8
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 2.5e-47 192.6 192 57.8
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 5.7e-47 191.4 191 57.1
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 9.7e-47 190.7 136 75.7
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.0e-44 183.0 190 58.4
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 4.5e-44 181.8 191 57.1
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 5.9e-44 181.4 191 57.6
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.3e-43 180.3 187 56.1
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.3e-43 180.3 189 55.6
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 2.2e-43 179.5 187 57.2
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 3.8e-43 178.7 187 54.5
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 5.0e-43 178.3 191 53.9
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 6.5e-43 177.9 187 55.6
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.4e-42 176.8 188 54.8
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.4e-42 176.8 188 54.8
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.4e-42 176.8 192 56.8
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.9e-42 176.4 191 54.5
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 5.5e-42 174.9 186 54.8
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 5.5e-42 174.9 192 53.6
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 2.1e-41 172.9 193 56.5
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 2.1e-41 172.9 193 56.5
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 2.7e-41 172.6 191 58.6
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 4.6e-41 171.8 129 72.1
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 6.1e-41 171.4 187 54.0
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 7.9e-41 171.0 196 51.5
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 3.0e-40 169.1 191 53.9
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 5.1e-40 168.3 196 53.6
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 8.8e-40 167.5 182 53.3
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.5e-39 166.8 191 51.8
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 1.5e-39 166.8 185 53.5
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 2.5e-39 166.0 196 52.6
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 2.5e-39 166.0 193 53.4
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 7.4e-39 164.5 178 55.6
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 2.8e-38 162.5 192 54.7
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 8.2e-38 161.0 193 51.8
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.8e-37 159.8 191 51.3
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 2.4e-37 159.5 200 50.0
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 2.4e-37 159.5 168 55.4
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 6.9e-37 157.9 187 54.5
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 9.1e-37 157.5 165 57.0
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 1.2e-36 157.1 193 50.8
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 2.0e-36 156.4 148 64.9
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 2.6e-36 156.0 192 50.0
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 3.4e-36 155.6 187 52.9
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 4.5e-36 155.2 163 57.1
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 5.9e-36 154.8 189 51.3
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.9e-36 154.8 184 51.6
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 7.7e-36 154.5 181 51.9
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 7.7e-36 154.5 198 51.5
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 1.0e-35 154.1 201 52.7
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.3e-35 153.7 195 50.3
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.7e-35 153.3 197 49.2
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 1.7e-35 153.3 191 50.8
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 2.2e-35 152.9 171 57.3
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 2.9e-35 152.5 197 50.3
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 5.0e-35 151.8 186 51.6
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 5.0e-35 151.8 190 50.5
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 6.5e-35 151.4 194 50.5
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 8.5e-35 151.0 183 51.4
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 1.1e-34 150.6 194 49.0
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 1.1e-34 150.6 189 48.1
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.9e-34 149.8 180 52.8
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.9e-34 149.8 194 50.5
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 2.5e-34 149.4 189 49.2
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 3.2e-34 149.1 194 48.5
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 4.2e-34 148.7 191 51.3
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 4.2e-34 148.7 194 48.5
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 5.5e-34 148.3 188 50.5
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 5.5e-34 148.3 190 48.4
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 7.2e-34 147.9 193 50.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.2e-33 147.1 196 47.4
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.6e-33 146.7 190 50.0
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 3.6e-33 145.6 178 51.1
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 6.1e-33 144.8 185 45.4
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 7.9e-33 144.4 185 48.6
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.0e-32 144.1 183 48.6
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 1.4e-32 143.7 191 50.8
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.4e-32 143.7 191 50.8
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 3.0e-32 142.5 180 47.2
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 3.9e-32 142.1 190 47.9
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 3.9e-32 142.1 184 49.5
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 1.1e-31 140.6 192 47.4
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 2.0e-31 139.8 175 49.7
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 3.3e-31 139.0 195 45.6
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 3.3e-31 139.0 195 45.6
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.7e-30 136.7 194 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 1.4e-29 133.7 189 45.0
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.9e-26 123.2 188 44.1
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 7.2e-26 121.3 189 41.3
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 2.7e-25 119.4 212 41.5
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 2.3e-24 116.3 202 40.6
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 8.8e-24 114.4 146 47.9
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 7.5e-23 111.3 144 50.0
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 2.2e-22 109.8 172 43.0
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 2.2e-22 109.8 148 45.9
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 2.2e-22 109.8 189 41.3
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 2.2e-22 109.8 186 40.3
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 1.6e-20 103.6 132 49.2
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 4.5e-20 102.1 83 68.7
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.1e-18 97.4 90 56.7
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.5e-18 97.1 83 63.9
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.9e-18 96.7 143 45.5
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 2.5e-18 96.3 83 63.9
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 3.2e-18 95.9 83 62.7
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.2e-18 95.9 74 70.3
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 6.1e-17 91.7 59 78.0
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 4.0e-16 89.0 74 56.8
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 2.6e-15 86.3 78 61.5
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 3.8e-11 72.4 197 32.5
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 8.5e-11 71.2 110 44.5
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.7e-09 66.2 115 40.9
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 6.1e-09 65.1 60 60.0
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 6.1e-09 65.1 122 43.4
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 1.5e-07 60.5 85 48.2
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 2.0e-07 60.1 176 30.1


User provided reference genes

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