Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 6.9e-120 434.5 310 100.0
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.4e-59 234.2 306 53.6
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.1e-56 224.6 302 55.6
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 8.6e-38 161.8 303 42.2
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 2.8e-36 156.8 311 50.8
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 3.2e-32 143.3 309 45.0
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 3.2e-32 143.3 309 45.0
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 2.1e-31 140.6 309 49.2
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 3.9e-30 136.3 147 48.3
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 1.8e-27 127.5 304 45.1
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 1.8e-27 127.5 304 45.1
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 5.8e-26 122.5 151 51.0
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 7.6e-26 122.1 152 49.3
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 7.6e-26 122.1 152 49.3
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 4.1e-24 116.3 219 37.0
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 4.1e-24 116.3 219 37.0
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.6e-23 114.4 334 31.1
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 7.8e-23 112.1 151 45.0
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 4.7e-20 102.8 333 31.2
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 4.0e-19 99.8 237 49.4
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 1.2e-18 98.2 147 42.2
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 2.6e-18 97.1 203 36.9
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 2.3e-14 84.0 152 38.8
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 2.3e-14 84.0 156 41.0
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 6.6e-14 82.4 151 37.7
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 6.6e-14 82.4 93 49.5
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.5e-13 81.3 152 37.5
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 3.3e-13 80.1 141 39.7
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 3.3e-13 80.1 141 39.7
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 3.3e-13 80.1 151 36.4
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 2.1e-12 77.4 55 52.7
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 2.1e-12 77.4 55 52.7
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 4.8e-12 76.3 160 33.1
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 6.2e-12 75.9 175 33.7
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.8e-11 74.3 173 31.2
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 6.9e-11 72.4 154 34.4
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 9.0e-11 72.0 60 46.7
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.5e-10 71.2 156 32.7
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 1.5e-10 71.2 156 35.3
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 3.4e-10 70.1 55 49.1
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 3.4e-10 70.1 150 37.3
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 4.5e-10 69.7 144 31.9
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 5.8e-10 69.3 141 29.1
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 7.6e-10 68.9 148 36.5
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 7.6e-10 68.9 149 32.9
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 1.7e-09 67.8 143 35.7
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 6.4e-09 65.9 59 42.4
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 6.4e-09 65.9 149 30.2
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 8.4e-09 65.5 149 33.6
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 1.1e-08 65.1 146 34.9
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 1.4e-08 64.7 161 31.7
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 1.9e-08 64.3 173 32.4
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 1.9e-08 64.3 160 34.4
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 1.9e-08 64.3 161 31.1
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 4.2e-08 63.2 149 31.5
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 9.3e-08 62.0 151 32.5
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 1.2e-07 61.6 158 27.8
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 1.2e-07 61.6 161 32.9
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 2.1e-07 60.8 111 35.1
Gohir.A07G170878 Gossypium hirsutum HOM05D019103 ORTHO05D010111 4.6e-07 59.7 42 54.8
Gohir.D07G177633 Gossypium hirsutum HOM05D019103 ORTHO05D010111 4.6e-07 59.7 42 54.8
Gorai.001G198600 Gossypium raimondii HOM05D019103 ORTHO05D010111 4.6e-07 59.7 42 54.8
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 4.6e-07 59.7 54 46.3
Atru.chr3.964 Acer truncatum HOM05D008569 ORTHO05D010111 6.0e-07 59.3 58 48.3
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 7.9e-07 58.9 42 57.1
Oeu031633.1 Olea europaea HOM05D008569 ORTHO05D010111 1.0e-06 58.5 117 35.9
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 2.3e-06 57.4 42 52.4
Carub.0003s3112 Capsella rubella HOM05D000174 ORTHO05D001526 3.0e-06 57.0 51 49.0
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 3.0e-06 57.0 116 32.8
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 3.0e-06 57.0 64 42.2
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.0e-06 57.0 64 42.2
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.0e-06 57.0 64 42.2
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 3.9e-06 56.6 154 30.5
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 5.1e-06 56.2 64 40.6
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 5.1e-06 56.2 57 45.6
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 5.1e-06 56.2 89 32.6
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 5.1e-06 56.2 57 45.6
SGA_v2.0_scaffold11G05961 Striga asiatica HOM05D010587 ORTHO05D000630 8.7e-06 55.5 148 33.1
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 8.7e-06 55.5 37 56.8


User provided reference genes

Program Settings