Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 6.8e-204 713.8 357 100.0
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 1.9e-177 625.9 354 87.9
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 5.6e-174 614.4 356 85.4
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.1e-172 610.1 356 85.7
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.5e-171 606.3 356 85.7
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.7e-170 602.8 350 85.1
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 4.2e-161 571.6 350 82.3
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 4.2e-161 571.6 350 82.3
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 2.7e-160 568.9 349 81.9
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 4.6e-160 568.2 349 81.9
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.3e-159 566.6 349 81.7
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 2.1e-157 559.3 351 81.5
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.0e-143 513.8 375 70.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.1e-132 477.2 327 72.8
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 4.1e-116 422.2 296 69.9
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 5.3e-116 421.8 326 65.3
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 4.5e-115 418.7 293 70.3
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.0e-114 417.5 293 70.0
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 2.9e-114 416.0 352 62.8
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 5.0e-114 415.2 292 68.8
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 6.5e-114 414.8 292 69.2
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.9e-113 413.3 349 61.6
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.2e-112 410.6 294 69.0
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 3.3e-110 402.5 293 67.9
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 4.4e-110 402.1 315 64.1
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 1.7e-109 400.2 293 67.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 2.8e-109 399.4 326 60.4
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 8.2e-109 397.9 291 66.3
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 1.1e-108 397.5 316 63.9
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.8e-108 396.7 295 66.4
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.4e-108 396.4 288 68.8
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 3.1e-108 396.0 335 62.4
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 5.3e-108 395.2 311 64.0
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 5.3e-108 395.2 339 59.9
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.0e-108 394.8 311 63.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.6e-107 393.7 291 67.4
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 3.5e-107 392.5 349 59.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.5e-107 392.5 291 67.0
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 4.5e-107 392.1 417 53.0
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 4.5e-107 392.1 363 59.0
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 7.7e-107 391.3 337 59.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 1.3e-106 390.6 342 59.6
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.2e-106 389.8 325 62.8
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 2.2e-106 389.8 335 62.1
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 2.2e-106 389.8 292 65.4
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 5.0e-106 388.7 348 58.6
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 8.5e-106 387.9 349 58.7
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.1e-105 387.5 288 65.3
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 1.9e-105 386.7 293 64.5
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.2e-105 385.6 299 63.2
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 1.2e-104 384.0 281 67.3
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.7e-104 382.9 337 58.2
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 2.7e-104 382.9 291 66.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 3.6e-104 382.5 339 57.2
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 1.4e-103 380.6 288 66.3
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 4.0e-103 379.0 316 60.8
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 4.0e-103 379.0 281 65.5
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.3e-101 374.0 290 64.1
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.3e-101 374.0 281 64.4
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.7e-101 373.6 378 56.3
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 1.7e-101 373.6 328 59.1
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 1.7e-101 373.6 281 64.8
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 6.3e-101 371.7 302 63.6
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.4e-100 370.5 281 66.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.4e-100 370.5 281 64.4
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 9.1e-100 367.9 286 64.7
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.7e-99 366.3 328 58.2
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 3.5e-99 365.9 281 64.4
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 8.5e-98 361.3 355 56.3
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.9e-97 360.1 325 57.8
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 3.2e-97 359.4 288 61.8
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.2e-97 359.4 289 63.3
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 3.2e-97 359.4 291 63.2
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 2.1e-96 356.7 337 56.4
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 2.7e-96 356.3 285 63.2
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 3.6e-96 355.9 297 60.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.8e-95 353.6 301 59.8
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.1e-92 344.4 290 59.3
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.2e-91 340.9 308 57.8
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 5.0e-90 335.5 292 58.6
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 8.5e-90 334.7 274 61.3
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 3.7e-85 319.3 354 51.7
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 7.0e-84 315.1 247 61.9
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 3.5e-83 312.8 276 58.0
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 5.9e-83 312.0 245 63.3
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 6.6e-82 308.5 301 53.8
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 4.3e-81 305.8 282 55.3
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-78 295.8 244 61.1
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 6.6e-74 282.0 299 48.8
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 6.6e-74 282.0 272 55.1
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 8.6e-74 281.6 199 66.8
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.5e-73 280.8 341 47.5
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 4.0e-71 272.7 281 53.0
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 1.3e-69 267.7 260 52.7
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.7e-69 267.3 315 44.8
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 1.9e-68 263.8 324 47.5
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 8.9e-63 245.0 295 43.7
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.6e-54 216.9 148 67.6
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 6.4e-53 212.2 232 47.0
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 4.7e-48 196.1 137 65.0
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.4e-47 194.5 347 36.3
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 4.0e-47 193.0 161 63.4
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 5.2e-47 192.6 164 59.8
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 2.4e-39 167.2 359 34.0
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.5e-33 147.9 163 46.0
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 3.3e-33 146.7 303 35.3
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 8.7e-26 122.1 146 45.9
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.1e-20 105.1 69 68.1
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 6.0e-19 99.4 126 51.6
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.5e-17 94.0 100 49.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.0e-13 79.7 171 34.5
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 2.5e-09 67.4 212 31.1
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.3e-08 65.1 243 27.2
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 3.7e-08 63.5 170 32.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 3.7e-08 63.5 170 32.9
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 8.2e-08 62.4 170 32.4
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 2.4e-07 60.8 163 32.5
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 3.1e-07 60.5 62 46.8
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 3.1e-07 60.5 62 46.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.1e-07 60.5 157 32.5
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.1e-07 60.1 132 34.1
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 4.1e-07 60.1 183 30.6
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 5.3e-07 59.7 175 30.3
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 5.3e-07 59.7 183 31.1
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 5.3e-07 59.7 180 31.1
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 9.1e-07 58.9 183 31.1
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 9.1e-07 58.9 179 30.7
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-06 58.5 180 31.1
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.5e-06 58.2 246 27.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.0e-06 57.8 182 29.7
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.6e-06 57.4 182 29.7
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.6e-06 57.4 180 31.1
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.9e-06 56.2 149 28.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 7.7e-06 55.8 149 28.9


User provided reference genes

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