Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 5.4e-171 604.4 336 100.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-151 540.0 338 91.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.8e-150 536.2 339 91.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.2e-143 510.8 336 86.0
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.1e-134 482.3 336 83.9
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.6e-130 469.9 336 83.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.5e-128 463.4 336 82.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-127 459.9 337 80.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.7e-127 459.9 337 80.7
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.3e-127 458.0 337 80.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.3e-126 454.9 337 79.8
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 8.8e-121 437.6 336 80.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 6.3e-119 431.4 336 78.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.7e-116 423.3 331 77.9
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.7e-114 415.2 331 76.4
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.0e-114 414.5 341 71.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.5e-109 398.7 350 68.6
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-107 393.7 331 74.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 7.2e-107 391.3 348 67.8
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 4.3e-99 365.5 282 76.6
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.4e-96 355.9 348 60.1
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.4e-96 355.5 349 60.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-95 354.0 348 59.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.9e-95 352.8 348 58.9
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.9e-95 352.8 348 59.2
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.9e-95 352.8 348 58.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.9e-95 352.1 348 59.8
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.9e-95 352.1 348 59.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 6.4e-95 351.7 348 60.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.1e-94 349.0 348 59.2
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.6e-93 347.1 348 59.5
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.6e-93 347.1 350 58.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.0e-93 346.7 341 59.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 6.0e-93 345.1 348 58.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 7.8e-93 344.7 348 56.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 2.3e-92 343.2 348 57.2
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-92 343.2 350 57.7
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.0e-92 342.8 348 57.8
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.0e-92 342.8 348 57.5
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.1e-91 340.9 348 57.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.5e-91 340.5 348 56.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.5e-91 340.5 348 57.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.9e-91 340.1 348 57.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.5e-91 339.7 340 59.7
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-91 339.7 348 57.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.5e-91 339.7 348 57.2
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.2e-90 337.4 347 59.1
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-90 337.0 348 56.9
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.1e-90 336.7 348 57.5
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.1e-90 336.7 348 56.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.6e-90 335.9 343 60.1
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.6e-90 335.9 348 56.3
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.1e-89 334.3 338 58.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.4e-89 334.0 348 56.6
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.4e-89 334.0 340 57.6
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.8e-89 333.6 376 55.1
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.3e-89 333.2 347 60.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.3e-89 333.2 347 58.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.0e-89 332.4 348 56.9
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 8.9e-89 331.3 348 56.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.5e-88 330.5 348 56.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.6e-88 329.7 348 56.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.4e-88 328.9 338 56.5
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.9e-87 326.2 318 60.1
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 8.3e-87 324.7 345 55.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.4e-86 323.9 348 56.6
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.1e-86 322.4 343 55.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 4.1e-86 322.4 348 55.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.4e-86 322.0 348 54.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.2e-86 321.2 344 55.5
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 9.2e-86 321.2 348 54.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.2e-85 320.9 316 59.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.6e-85 320.5 349 55.0
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.7e-84 317.0 348 55.7
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-84 317.0 348 56.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.5e-83 313.2 348 55.7
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.3e-83 311.6 348 55.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.2e-82 308.5 348 53.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 8.1e-82 308.1 348 55.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.2e-81 305.4 336 56.2
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 8.9e-81 304.7 344 55.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 8.9e-81 304.7 343 53.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-80 304.3 344 52.6
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.4e-80 302.4 348 53.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 5.8e-80 302.0 344 51.7
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.2e-79 300.1 348 52.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.4e-79 298.5 322 55.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.9e-78 297.0 284 58.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 9.2e-78 294.7 348 50.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.2e-77 294.3 316 58.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 7.8e-77 291.6 348 53.2
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.3e-76 290.8 344 52.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.0e-76 289.7 348 52.3
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 6.6e-76 288.5 339 53.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.5e-75 286.6 350 52.9
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 9.5e-75 284.6 348 51.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.8e-74 283.1 336 50.6
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 3.6e-74 282.7 336 52.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.1e-74 281.6 348 51.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.2e-73 278.9 333 52.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.2e-72 277.7 334 50.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-72 277.3 337 54.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.4e-72 276.2 344 50.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.2e-71 273.5 397 46.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.9e-71 273.1 324 51.9
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.9e-70 270.4 336 49.7
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 5.4e-70 268.9 348 48.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 7.1e-70 268.5 348 50.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.0e-69 265.4 348 47.7
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.0e-69 265.4 348 47.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-68 264.6 348 49.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.0e-68 263.1 334 49.7
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.1e-68 262.3 348 48.3
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 8.7e-68 261.5 344 50.6
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.9e-67 260.4 334 49.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 5.6e-67 258.8 348 48.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 9.6e-67 258.1 315 50.8
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.8e-66 255.8 333 49.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.4e-65 253.4 290 54.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 4.0e-65 252.7 348 46.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 9.0e-65 251.5 340 48.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.5e-64 250.8 341 45.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-64 250.0 292 51.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.6e-64 248.4 343 46.1
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.4e-62 244.2 311 49.2
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-62 243.4 271 54.6
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.2e-62 242.7 290 50.3
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.4e-62 242.3 292 50.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.4e-62 242.3 334 47.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-61 240.0 271 53.9
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.6e-61 239.2 348 45.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 4.6e-61 239.2 264 52.7
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 7.8e-61 238.4 259 54.4
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.0e-60 238.0 283 51.9
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.1e-60 235.7 334 47.6
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.1e-60 235.7 348 46.0
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.9e-59 233.8 348 45.1
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 5.6e-59 232.3 289 50.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 8.1e-58 228.4 346 46.2
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-57 228.0 348 46.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.9e-55 219.2 286 48.3
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.9e-52 209.5 287 53.0
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.1e-51 208.0 345 42.3
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.1e-50 203.8 138 81.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 9.0e-49 198.4 336 43.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.3e-47 194.5 346 40.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.2e-47 193.7 298 45.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.9e-46 190.7 348 39.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.2e-46 189.9 321 40.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 3.5e-45 186.4 347 38.9
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.1e-44 182.6 311 44.7
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 6.7e-44 182.2 345 38.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-41 174.9 239 45.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.4e-41 173.7 333 44.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 9.0e-41 171.8 263 42.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-40 171.4 230 47.8
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.7e-37 160.2 356 33.4
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.5e-37 159.8 290 38.6
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 3.5e-37 159.8 139 62.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.8e-36 157.5 158 58.9
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 6.7e-36 155.6 293 44.7
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.3e-34 149.1 176 50.6
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.1e-33 146.7 350 35.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 6.9e-33 145.6 335 41.8
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 6.9e-33 145.6 335 41.8
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.6e-29 133.3 338 32.5
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 6.3e-26 122.5 344 29.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.0e-24 117.5 127 63.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.4e-20 104.8 302 37.1
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.3e-20 104.0 172 42.4
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.1e-19 101.7 111 62.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 4.4e-19 99.8 168 39.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.1e-14 85.1 55 81.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.6e-13 81.3 54 79.6
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.3e-10 71.6 132 47.0
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 4.1e-09 66.6 125 44.0
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 3.8e-07 60.1 125 41.6


User provided reference genes

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