Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 3.3e-245 851.3 435 100.0
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 1.4e-230 802.7 435 91.5
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 4.8e-228 794.3 435 91.7
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 3.6e-215 751.5 417 87.8
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 1.4e-214 749.6 417 87.8
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 8.8e-214 746.9 414 87.7
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 1.5e-213 746.1 414 87.7
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 2.6e-210 735.3 413 86.7
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 2.1e-207 725.7 414 85.5
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 1.7e-201 706.1 413 83.5
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 1.9e-200 702.6 412 83.5
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 1.6e-186 656.4 484 68.2
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 4.0e-174 615.1 424 71.9
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.2e-162 577.0 412 67.2
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 4.6e-162 575.1 414 67.6
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 3.9e-161 572.0 412 67.2
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 6.6e-161 571.2 418 65.3
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 2.5e-160 569.3 410 66.8
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 3.6e-159 565.5 422 64.2
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 6.2e-159 564.7 416 66.3
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.1e-158 563.9 418 64.8
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 1.8e-158 563.1 415 65.8
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 1.8e-158 563.1 415 65.8
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 3.1e-158 562.4 415 65.8
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 4.0e-158 562.0 427 65.1
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 5.2e-158 561.6 402 67.4
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 2.0e-157 559.7 409 66.3
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 2.9e-156 555.8 419 64.9
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 3.8e-156 555.4 412 64.3
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 3.8e-156 555.4 416 65.1
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 1.1e-155 553.9 421 64.4
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 1.1e-155 553.9 409 65.8
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 1.1e-155 553.9 417 65.2
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 2.4e-155 552.7 412 66.3
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 5.4e-155 551.6 420 64.5
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 7.1e-155 551.2 427 62.3
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 1.6e-154 550.1 413 65.1
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 2.7e-154 549.3 417 64.7
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 3.5e-154 548.9 408 64.5
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 4.6e-154 548.5 417 64.7
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 6.0e-154 548.1 411 64.0
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 6.0e-154 548.1 415 63.6
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 7.8e-154 547.7 417 63.8
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 7.8e-154 547.7 413 65.1
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 1.3e-153 547.0 410 64.1
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 2.3e-153 546.2 409 64.1
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.0e-153 545.8 417 64.3
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.0e-153 545.8 417 64.3
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 1.5e-152 543.5 415 62.9
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 1.9e-152 543.1 415 63.6
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 7.3e-152 541.2 418 61.7
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 9.6e-152 540.8 406 63.8
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 1.6e-151 540.0 399 65.2
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 3.6e-151 538.9 415 62.2
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 4.8e-151 538.5 413 63.9
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 1.4e-150 537.0 417 61.6
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 3.1e-150 535.8 409 61.9
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 9.0e-150 534.3 403 64.8
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 2.0e-149 533.1 401 64.6
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 1.3e-148 530.4 415 62.7
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.3e-148 530.4 420 61.2
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 4.9e-148 528.5 404 63.1
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 8.4e-148 527.7 414 62.1
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 3.2e-147 525.8 416 63.0
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 9.3e-147 524.2 417 60.9
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 1.2e-146 523.9 411 62.0
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 7.8e-146 521.2 402 61.2
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 5.1e-145 518.5 411 59.6
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 5.1e-145 518.5 402 60.7
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 3.3e-144 515.8 410 61.0
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 2.8e-143 512.7 404 61.1
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 2.8e-143 512.7 407 60.7
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 1.1e-142 510.8 406 61.1
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 4.0e-142 508.8 415 59.3
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 7.6e-141 504.6 373 63.5
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 1.1e-139 500.7 408 59.8
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.4e-139 500.4 405 60.0
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 2.4e-139 499.6 420 58.8
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 1.5e-136 490.3 447 56.4
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 3.3e-136 489.2 405 59.8
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 4.3e-136 488.8 417 58.0
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 2.1e-135 486.5 298 85.2
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 3.7e-135 485.7 401 58.4
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 8.1e-135 484.6 423 55.8
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 1.1e-134 484.2 405 59.3
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 5.3e-134 481.9 453 52.8
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 9.0e-134 481.1 378 62.2
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 4.9e-132 475.3 407 57.2
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 5.5e-131 471.9 321 67.0
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 9.3e-131 471.1 442 55.0
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 1.6e-130 470.3 440 55.0
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 5.1e-129 465.3 366 61.2
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 5.7e-128 461.8 325 66.5
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 4.0e-126 455.7 329 62.9
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 3.8e-124 449.1 346 60.1
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 4.2e-123 445.7 346 60.1
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 7.1e-123 444.9 406 53.7
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 5.0e-116 422.2 423 51.1
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 9.7e-112 407.9 319 61.1
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 5.3e-110 402.1 291 64.6
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 1.9e-107 393.7 348 54.6
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 6.1e-106 388.7 398 51.0
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 3.0e-105 386.3 312 59.0
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 1.5e-104 384.0 277 67.1
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 3.7e-95 352.8 360 49.4
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 5.3e-94 349.0 380 50.0
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 1.2e-93 347.8 298 54.7
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 4.2e-91 339.3 407 45.9
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 6.5e-84 315.5 324 50.9
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 1.2e-82 311.2 245 60.4
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.2e-82 311.2 303 52.1
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 8.0e-82 308.5 300 49.7
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 1.0e-81 308.1 290 53.8
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 1.5e-75 287.7 215 66.0
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 8.0e-74 282.0 320 47.2
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 2.7e-69 266.9 160 78.1
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 3.5e-69 266.5 258 50.4
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 1.0e-68 265.0 180 66.7
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 8.6e-68 261.9 266 50.0
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 1.7e-55 221.1 231 46.8
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 7.3e-51 205.7 157 61.1
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 5.6e-43 179.5 143 60.1
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 6.0e-37 159.5 275 34.5
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 1.3e-36 158.3 124 59.7
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 8.7e-36 155.6 118 59.3
Dinv09041 Davidia involucrata HOM05D006166 ORTHO05D000293 3.4e-32 143.7 115 66.1
Haze_10661 Corylus avellana HOM05D006166 ORTHO05D007663 3.6e-26 123.6 117 59.8
CDE05G1058 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 4.8e-18 96.7 57 75.4
Haze_10677 Corylus avellana HOM05D006166 ORTHO05D007663 1.8e-09 68.2 43 69.8
SHI16502 Sapria himalayana HOM05D006166 ORTHO05D007663 5.3e-09 66.6 39 74.4


User provided reference genes

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