Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 7.6e-172 607.1 304 100.0
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.5e-159 565.5 302 94.0
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 6.2e-158 560.8 302 92.7
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 3.0e-152 542.0 301 89.7
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.4e-146 523.1 307 86.6
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.2e-145 520.0 304 87.2
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.4e-144 516.5 306 85.0
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 8.8e-144 513.8 306 84.0
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 8.8e-144 513.8 306 84.0
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 3.3e-143 511.9 307 84.7
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.8e-142 508.8 307 84.4
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 3.7e-142 508.4 305 84.6
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 3.7e-142 508.4 305 84.6
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 5.3e-141 504.6 305 84.6
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 1.5e-140 503.1 305 83.3
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 1.5e-140 503.1 305 84.3
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.2e-131 472.6 296 81.8
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 7.2e-130 467.6 305 79.7
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 7.7e-124 447.6 313 73.2
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 1.7e-118 429.9 308 74.0
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 2.8e-110 402.5 283 72.4
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 6.3e-110 401.4 294 70.1
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 3.1e-109 399.1 290 70.3
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 7.0e-109 397.9 297 69.4
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 7.7e-108 394.4 299 69.2
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.0e-107 394.0 295 68.5
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 2.9e-107 392.5 301 68.1
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 3.8e-107 392.1 279 73.1
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 3.8e-107 392.1 279 72.0
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 6.6e-107 391.3 299 68.6
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 6.6e-107 391.3 302 68.2
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.1e-106 390.6 299 67.6
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.1e-106 390.6 279 72.8
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.5e-106 389.4 302 67.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 3.3e-106 389.0 290 70.3
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 3.3e-106 389.0 302 67.9
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 7.2e-106 387.9 291 68.7
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 9.5e-106 387.5 300 68.3
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 9.5e-106 387.5 271 73.8
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.2e-105 387.1 287 69.3
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.2e-105 387.1 242 78.9
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 2.8e-105 386.0 306 67.6
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 3.6e-105 385.6 269 72.5
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 4.7e-105 385.2 270 70.7
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 4.7e-105 385.2 265 72.8
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 6.1e-105 384.8 279 71.3
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 6.1e-105 384.8 270 70.7
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 6.1e-105 384.8 273 70.7
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 8.0e-105 384.4 282 72.0
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 1.4e-104 383.6 270 70.7
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 1.8e-104 383.3 293 69.3
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.3e-104 382.9 298 66.8
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.3e-104 382.9 299 67.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 3.0e-104 382.5 248 75.8
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 6.8e-104 381.3 289 67.8
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 6.8e-104 381.3 240 77.9
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 8.9e-104 380.9 303 65.7
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 2.0e-103 379.8 279 70.3
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 2.0e-103 379.8 285 69.1
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 2.6e-103 379.4 240 77.5
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 3.4e-103 379.0 239 77.4
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 3.4e-103 379.0 305 67.2
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 7.5e-103 377.9 284 69.0
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 7.5e-103 377.9 245 76.7
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 9.8e-103 377.5 291 67.4
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 1.3e-102 377.1 256 74.2
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.3e-102 377.1 277 69.7
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 2.2e-102 376.3 284 68.3
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 4.9e-102 375.2 282 68.4
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 6.3e-102 374.8 242 76.4
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 2.4e-101 372.9 268 70.5
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 2.4e-101 372.9 240 77.1
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 3.2e-101 372.5 266 69.2
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 3.2e-101 372.5 258 72.5
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 5.4e-101 371.7 286 66.8
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 1.2e-100 370.5 271 70.5
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 1.6e-100 370.2 293 65.9
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 4.5e-100 368.6 265 69.8
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 1.3e-99 367.1 260 71.2
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 2.3e-99 366.3 260 71.2
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 2.9e-99 365.9 259 70.7
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 2.9e-99 365.9 260 71.2
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.1e-98 364.0 245 73.5
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 1.5e-98 363.6 257 69.6
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.9e-98 363.2 260 70.0
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 9.5e-98 360.9 245 73.5
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 8.9e-96 354.4 272 65.8
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 4.9e-94 348.6 240 73.3
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 8.3e-94 347.8 265 65.7
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.9e-93 346.7 281 65.8
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 6.6e-91 338.2 265 62.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.5e-90 337.0 309 62.1
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 3.3e-90 335.9 216 77.8
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.2e-89 334.0 213 77.5
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 2.8e-89 332.8 242 69.4
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.4e-88 330.5 228 73.7
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 2.7e-84 316.2 224 71.4
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.7e-83 313.5 255 62.7
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 5.6e-82 308.5 239 67.8
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 3.6e-81 305.8 246 62.6
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 1.8e-80 303.5 220 71.8
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 2.3e-80 303.1 315 56.8
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 3.1e-80 302.8 219 71.7
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 8.9e-80 301.2 219 71.7
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.7e-78 297.0 223 68.2
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 1.4e-77 293.9 204 73.0
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 3.6e-73 279.3 219 67.1
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 6.8e-72 275.0 246 57.7
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 7.6e-71 271.6 189 73.5
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.6e-68 263.8 297 52.9
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 6.9e-64 248.4 186 69.4
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 3.5e-60 236.1 244 52.9
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 8.1e-57 224.9 292 45.9
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 4.8e-49 199.1 129 76.0
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 2.3e-43 180.3 117 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 1.9e-37 160.6 146 56.8
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 2.8e-33 146.7 112 64.3
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 5.9e-31 139.0 95 67.4
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.1e-28 130.6 82 75.6
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 5.3e-24 115.9 86 67.4
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 2.0e-23 114.0 85 64.7
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 6.1e-20 102.4 64 84.4
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.6e-10 70.5 48 70.8
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 2.2e-06 57.4 46 58.7


User provided reference genes

Program Settings