Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 3.3e-173 611.7 325 100.0
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 7.4e-157 557.4 299 93.3
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.7e-153 546.2 300 92.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 3.5e-151 538.5 299 90.6
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 4.6e-151 538.1 301 88.4
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.0e-150 537.0 301 88.0
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.0e-150 537.0 299 89.6
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.8e-150 536.2 299 89.3
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.0e-150 535.4 299 89.3
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.0e-150 535.4 299 89.3
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.9e-150 535.0 299 89.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 5.1e-150 534.6 301 88.7
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.9e-149 532.7 301 87.4
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.9e-149 532.7 301 87.7
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.9e-149 532.7 301 87.7
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 3.3e-149 531.9 299 89.0
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 4.3e-149 531.6 301 87.4
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.3e-148 530.0 301 87.0
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.1e-139 500.4 300 80.7
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.8e-132 474.9 300 76.3
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.4e-131 472.6 299 75.6
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 4.1e-131 471.9 300 75.3
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 5.3e-131 471.5 299 75.6
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.2e-130 470.3 299 75.6
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 3.5e-130 468.8 300 74.3
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 6.5e-129 464.5 299 74.6
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.5e-128 462.6 299 71.9
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.2e-128 462.2 300 73.7
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 5.5e-128 461.5 299 72.9
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 9.4e-128 460.7 300 73.3
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.6e-127 459.9 299 73.6
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.7e-127 458.4 299 73.6
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 6.1e-127 458.0 299 72.9
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.3e-126 456.1 299 72.9
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 8.8e-126 454.1 299 71.6
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.1e-125 453.8 299 72.2
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.5e-125 453.4 299 72.2
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 2.0e-125 453.0 300 72.7
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 2.6e-125 452.6 299 73.2
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 5.7e-125 451.4 299 72.6
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 7.5e-125 451.1 325 68.3
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 7.5e-125 451.1 325 67.7
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.2e-124 449.5 299 71.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 3.7e-124 448.7 299 72.2
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 4.8e-124 448.4 299 71.9
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 6.3e-124 448.0 300 69.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 6.3e-124 448.0 299 73.2
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.4e-123 446.8 257 83.3
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.4e-123 446.0 299 71.2
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 2.4e-123 446.0 299 71.6
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.3e-123 444.9 299 70.6
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 7.0e-123 444.5 300 70.7
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.2e-122 443.7 299 70.9
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.6e-122 443.4 326 66.0
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.0e-122 443.0 299 70.9
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.7e-122 442.6 299 70.9
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 2.7e-122 442.6 300 70.7
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 3.5e-122 442.2 299 70.2
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 4.5e-122 441.8 299 71.2
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 5.9e-122 441.4 300 69.7
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 7.7e-122 441.0 300 71.7
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.0e-121 440.7 300 71.7
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.9e-121 439.1 299 68.2
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 2.9e-121 439.1 299 69.6
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.9e-121 439.1 299 70.2
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 8.5e-121 437.6 297 70.7
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 8.5e-121 437.6 293 71.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.1e-120 437.2 299 69.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.5e-120 436.8 299 69.9
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.9e-120 436.4 299 70.6
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.2e-120 435.6 299 69.2
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 3.2e-120 435.6 299 69.2
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 3.2e-120 435.6 299 68.2
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 3.2e-120 435.6 308 69.5
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 9.4e-120 434.1 299 69.6
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.1e-119 433.0 293 71.7
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.7e-119 432.6 299 68.9
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 3.6e-119 432.2 309 68.9
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 3.6e-119 432.2 297 69.4
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.7e-119 431.8 300 69.0
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 4.7e-119 431.8 310 68.1
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.7e-119 431.8 310 68.1
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.7e-119 431.8 310 68.1
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 6.1e-119 431.4 300 68.7
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 3.0e-118 429.1 298 68.5
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 4.0e-118 428.7 298 68.5
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.8e-118 427.6 310 67.1
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.2e-117 427.2 299 70.2
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 3.4e-117 425.6 299 68.6
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 4.4e-117 425.2 299 68.9
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 5.7e-117 424.9 299 68.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 7.5e-117 424.5 310 67.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 9.8e-117 424.1 320 65.9
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.7e-116 423.3 299 67.9
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.2e-116 422.9 302 68.2
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 3.7e-116 422.2 274 72.3
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.4e-115 419.5 299 67.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 7.0e-115 417.9 289 71.3
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.1e-115 417.5 277 71.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.1e-115 417.5 326 62.6
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.2e-114 417.2 299 68.2
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 3.5e-114 415.6 300 66.7
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 4.5e-114 415.2 299 68.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 2.2e-113 412.9 294 68.4
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.9e-113 412.5 297 68.0
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 6.5e-113 411.4 256 75.0
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 8.5e-113 411.0 298 65.4
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.5e-112 410.2 297 67.0
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.9e-112 409.8 294 68.0
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 2.1e-111 406.4 285 69.1
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 4.7e-111 405.2 289 68.2
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 8.0e-111 404.4 299 65.6
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 6.8e-110 401.4 291 65.6
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.8e-108 396.0 299 65.2
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.5e-106 388.7 253 72.7
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 8.6e-105 384.4 297 64.3
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.9e-104 383.3 297 64.3
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.6e-103 380.2 313 62.6
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.1e-91 340.9 296 56.8
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 6.0e-90 335.1 299 56.9
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.9e-88 330.1 221 69.7
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 1.9e-88 330.1 299 56.2
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 9.5e-88 327.8 297 54.9
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.1e-87 326.6 298 55.0
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.8e-85 318.5 208 72.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.4e-83 313.2 223 66.4
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 1.5e-80 303.9 307 51.5
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 4.3e-80 302.4 300 51.3
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 3.1e-78 296.2 276 56.2
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.1e-72 277.7 274 53.3
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 6.9e-70 268.5 289 47.4
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 8.1e-63 245.0 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 5.4e-59 232.3 213 55.9
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 7.4e-48 195.3 300 38.7
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 2.1e-42 177.2 171 57.3
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.1e-38 164.9 104 73.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 9.1e-30 135.2 93 69.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 7.7e-29 132.1 94 70.2
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 2.7e-26 123.6 90 68.9
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.3e-23 114.8 90 71.1
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.3e-23 114.8 90 71.1
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.1e-22 110.2 79 69.6
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.3e-17 94.0 90 60.0
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 2.8e-15 87.0 98 49.0
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 3.3e-08 63.5 84 46.4


User provided reference genes

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