Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 2.6e-153 545.4 294 100.0
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 5.3e-130 468.0 295 86.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.0e-128 463.8 294 85.7
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 7.0e-122 441.0 295 81.7
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.9e-120 435.6 295 81.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 8.5e-120 434.1 295 80.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 6.8e-117 424.5 297 79.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 4.4e-116 421.8 297 79.5
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.7e-113 412.5 295 77.3
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 8.5e-112 407.5 297 76.8
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.5e-111 406.0 295 77.6
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.6e-110 403.3 301 77.4
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 3.0e-109 399.1 298 76.5
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 3.0e-109 399.1 298 76.5
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 3.0e-109 399.1 298 76.5
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 6.8e-109 397.9 299 75.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.7e-107 393.3 295 74.9
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-107 393.3 298 75.8
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 4.1e-106 388.7 302 74.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-105 386.3 295 73.9
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 7.7e-105 384.4 295 73.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-104 383.6 304 74.0
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.1e-103 380.6 296 73.6
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 4.7e-102 375.2 304 72.7
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 9.8e-100 367.5 297 71.7
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.1e-85 319.3 294 63.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 8.9e-85 317.8 300 64.0
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 4.1e-82 308.9 297 62.3
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 7.1e-82 308.1 295 61.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.6e-81 307.0 295 61.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.7e-81 306.2 302 61.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.5e-79 299.7 293 61.8
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 5.6e-79 298.5 292 62.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.2e-78 297.4 278 61.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.8e-78 296.2 299 59.9
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.2e-76 290.8 259 63.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.5e-76 290.4 298 60.1
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.8e-76 288.5 260 63.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.3e-75 287.3 292 61.0
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.9e-75 286.2 300 59.3
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.9e-75 286.2 300 59.3
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.8e-75 285.8 303 57.8
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.1e-74 284.3 273 61.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-74 284.3 248 63.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.4e-74 283.1 301 59.1
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 7.1e-74 281.6 300 59.0
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.2e-74 281.2 298 58.1
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 9.2e-74 281.2 298 58.1
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.1e-73 280.0 282 59.6
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 3.3e-71 272.7 300 56.0
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 9.6e-71 271.2 297 55.9
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-70 270.8 298 56.4
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.6e-70 270.4 302 56.0
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 8.1e-70 268.1 291 56.0
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.1e-69 266.2 308 56.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 4.0e-69 265.8 296 57.4
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.2e-69 265.4 304 55.6
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 6.9e-69 265.0 292 56.2
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 6.9e-69 265.0 301 55.8
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 8.9e-69 264.6 302 53.3
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 8.9e-69 264.6 291 55.7
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.5e-68 263.8 289 56.4
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.5e-68 263.8 275 60.7
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.0e-68 263.5 256 59.8
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.0e-68 263.5 279 57.0
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.4e-68 262.7 255 60.8
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 5.8e-68 261.9 282 56.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 5.8e-68 261.9 261 58.6
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.2e-67 260.0 262 58.4
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 2.2e-67 260.0 292 56.8
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 2.9e-67 259.6 289 55.7
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 2.9e-67 259.6 263 58.2
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.9e-67 258.8 305 54.1
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.2e-66 256.1 294 54.4
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 4.2e-66 255.8 289 54.7
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 4.2e-66 255.8 262 56.9
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 7.1e-66 255.0 299 54.5
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.2e-65 254.2 284 52.8
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.0e-65 251.9 283 56.2
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 6.0e-65 251.9 291 55.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.8e-65 251.5 284 56.3
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.9e-64 249.2 240 60.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.6e-64 248.4 255 58.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 8.7e-64 248.1 255 59.2
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.7e-64 248.1 241 61.0
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 8.7e-64 248.1 301 52.5
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.9e-63 246.9 292 54.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-63 246.9 240 60.8
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.5e-63 246.5 305 53.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 3.3e-63 246.1 245 58.0
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.3e-63 246.1 240 60.8
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 4.3e-63 245.7 293 54.6
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.3e-63 245.7 240 60.4
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 5.6e-63 245.4 301 53.5
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.3e-63 245.0 283 53.7
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 9.6e-63 244.6 285 53.3
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-62 244.2 301 52.5
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.6e-62 243.8 234 59.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.1e-62 243.4 290 53.1
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.8e-62 243.0 289 54.3
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.8e-62 243.0 240 60.4
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 3.6e-62 242.7 247 58.3
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.2e-62 241.9 290 53.8
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.8e-61 240.4 291 52.6
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.0e-61 239.2 287 54.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 5.3e-61 238.8 289 53.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.0e-60 236.9 300 53.3
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 4.5e-60 235.7 284 53.5
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.5e-60 235.7 290 52.8
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 7.6e-60 235.0 299 50.2
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 9.9e-60 234.6 286 53.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 3.8e-59 232.6 258 54.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 6.4e-59 231.9 258 55.0
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 3.2e-58 229.6 307 49.8
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 5.4e-58 228.8 281 52.7
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.1e-57 226.9 283 53.0
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.3e-55 219.5 294 48.3
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.3e-54 217.6 209 65.6
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.8e-54 216.5 302 48.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 3.6e-54 216.1 297 51.9
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 8.1e-54 214.9 288 48.6
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-53 214.2 302 48.3
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 6.9e-53 211.8 285 49.5
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-52 211.1 275 52.7
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.4e-52 209.5 295 47.8
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 4.5e-52 209.1 234 52.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 9.9e-52 208.0 286 46.2
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 8.4e-51 204.9 292 45.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.6e-49 200.7 248 50.0
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.1e-49 200.3 281 48.0
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.5e-49 199.5 292 49.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 5.1e-48 195.7 251 50.2
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.6e-47 191.4 212 55.7
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-46 190.3 193 59.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.1e-46 190.3 263 48.7
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.8e-46 189.1 248 50.8
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.5e-43 178.7 295 46.1
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.2e-42 176.4 276 42.0
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.3e-40 170.2 203 51.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.0e-40 169.9 272 43.0
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 9.0e-37 158.3 157 62.4
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 9.0e-37 158.3 157 62.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 5.9e-36 155.6 167 55.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.0e-35 154.8 243 44.0
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 6.5e-35 152.1 259 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.1e-34 151.4 285 39.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.5e-34 150.2 309 41.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 4.2e-34 149.4 142 55.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.6e-33 146.0 181 51.4
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 5.1e-32 142.5 168 54.8
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 8.7e-32 141.7 285 40.7
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.5e-31 140.2 182 54.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.3e-30 137.9 154 48.7
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 6.9e-29 132.1 278 37.8
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.0e-27 128.3 161 47.2
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 6.5e-27 125.6 240 40.0
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 8.5e-27 125.2 204 39.2
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 8.5e-27 125.2 276 37.3
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.7e-25 120.2 156 47.4
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 1.7e-22 110.9 135 47.4
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.8e-21 107.5 288 33.0
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 9.1e-21 105.1 189 43.9
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.1e-17 94.0 81 70.4
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.0e-16 91.7 80 58.8
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.7e-15 85.9 70 61.4
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.7e-15 85.9 239 33.5
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 8.2e-14 82.0 153 39.9
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.1e-13 80.1 90 50.0
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.0e-12 77.4 151 42.4
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.9e-12 75.9 264 31.8
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-11 74.7 81 60.5
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.5e-11 72.4 112 48.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.9e-10 70.9 193 33.7
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.1e-09 67.4 150 44.0
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.7e-09 66.2 95 50.5
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 5.2e-08 62.8 48 62.5
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-07 61.6 60 63.3
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.8e-06 57.0 102 39.2


User provided reference genes

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