Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2152 Capsella rubella HOM05D000144 ORTHO05D114679 2.0e-92 342.4 172 100.0
AL3G38870 Arabidopsis lyrata HOM05D000144 ORTHO05D000392 5.0e-19 98.6 95 62.1
BraA01t03494Z Brassica rapa HOM05D000144 ORTHO05D024066 1.1e-18 97.4 140 45.7
A01p33860 Brassica napus HOM05D000144 ORTHO05D024066 1.2e-17 94.0 141 45.4
BcaB04g20617 Brassica carinata HOM05D000144 ORTHO05D024066 2.1e-17 93.2 138 44.9
BolC1t04283H Brassica oleracea HOM05D000144 ORTHO05D105712 4.7e-17 92.0 141 44.7
AL3G35580 Arabidopsis lyrata HOM05D000144 ORTHO05D000392 1.8e-16 90.1 104 52.9
AL662U10010 Arabidopsis lyrata HOM05D000144 ORTHO05D000392 1.8e-16 90.1 104 52.9
BcaC01g06447 Brassica carinata HOM05D000144 ORTHO05D015493 2.6e-12 76.3 113 46.0
C03p15460 Brassica napus HOM05D000144 ORTHO05D015493 2.6e-12 76.3 113 46.0
Ca_15315_v3 Cicer arietinum L. HOM05D003396 ORTHO05D003646 4.7e-09 65.5 35 80.0
Aa31LG8G13890 Aethionema arabicum HOM05D000144 ORTHO05D000392 1.4e-08 63.9 36 77.8
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 1.4e-08 63.9 40 70.0
Lj1g0007514 Lotus japonicus HOM05D000144 ORTHO05D000392 2.3e-08 63.2 34 79.4
Psat5g003080 Pisum sativum HOM05D000144 ORTHO05D000392 3.0e-08 62.8 34 79.4
DCAR_014670 Daucus carota HOM05D000144 ORTHO05D000392 3.9e-08 62.4 30 86.7
Lsat_1_v5_gn_3_45700 Lactuca sativa HOM05D000144 ORTHO05D000392 3.9e-08 62.4 30 93.3
Cpa.g.sc26.53 Carica papaya HOM05D000144 ORTHO05D000392 5.2e-08 62.0 30 86.7
Oeu061965.1 Olea europaea HOM05D000144 ORTHO05D000392 5.2e-08 62.0 30 90.0
VMungo1309G1353 Vigna mungo HOM05D000144 ORTHO05D000392 5.2e-08 62.0 30 90.0
Gohir.A01G003400 Gossypium hirsutum HOM05D000144 ORTHO05D000392 6.7e-08 61.6 30 86.7
Gorai.002G003800 Gossypium raimondii HOM05D000144 ORTHO05D000392 6.7e-08 61.6 30 86.7
Potri.002G021500 Populus trichocarpa HOM05D000144 ORTHO05D000392 6.7e-08 61.6 30 86.7
PGR042G3096 Punica granatum HOM05D000144 ORTHO05D000392 6.7e-08 61.6 30 86.7
HanXRQChr17g0553731 Helianthus annuus HOM05D000144 ORTHO05D000392 8.8e-08 61.2 30 90.0
BraA01t03493Z Brassica rapa HOM05D000144 ORTHO05D000392 1.1e-07 60.8 30 90.0
TAR376G0466 Trochodendron aralioides HOM05D000144 ORTHO05D000392 1.1e-07 60.8 30 86.7
Manes.18G013200 Manihot esculenta HOM05D000144 ORTHO05D000392 1.5e-07 60.5 30 90.0
Rhsim05G0062800 Rhododendron simsii HOM05D000144 ORTHO05D000392 1.5e-07 60.5 41 65.9
Sabra02G0017800 Salix brachista HOM05D000144 ORTHO05D000392 1.5e-07 60.5 30 83.3
PGSC0003DMG400001630 Solanum tuberosum HOM05D000144 ORTHO05D000392 1.5e-07 60.5 30 83.3
Actinidia20487 Actinidia chinensis HOM05D000144 ORTHO05D003707 2.0e-07 60.1 33 78.8
ECA232G2471 Erigeron canadensis HOM05D000144 ORTHO05D000392 2.0e-07 60.1 30 86.7
ECA234G3250 Erigeron canadensis HOM05D000144 ORTHO05D000392 2.0e-07 60.1 30 86.7
HanXRQChr10g0298981 Helianthus annuus HOM05D000144 ORTHO05D000392 2.0e-07 60.1 30 86.7
Thhalv10022161m.g Eutrema salsugineum HOM05D000144 ORTHO05D000392 2.6e-07 59.7 30 86.7
Manes.05G146600 Manihot esculenta HOM05D000144 ORTHO05D000392 2.6e-07 59.7 30 86.7
Peaxi162Scf00362g00960 Petunia axillaris HOM05D000144 ORTHO05D000392 2.6e-07 59.7 30 80.0
Prupe.8G161100 Prunus persica HOM05D000144 ORTHO05D000392 2.6e-07 59.7 28 89.3
Sc15g0004940 Simmondsia chinensis HOM05D000144 ORTHO05D000392 2.6e-07 59.7 30 83.3
THA.LOC104804338 Tarenaya hassleriana HOM05D000144 ORTHO05D000392 2.6e-07 59.7 30 90.0
Ciclev10029386m.g Citrus clementina HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 86.7
Duzib248G1548 Durio zibethinus HOM05D000144 ORTHO05D000392 3.3e-07 59.3 32 81.2
Thhalv10027585m.g Eutrema salsugineum HOM05D000144 ORTHO05D000392 3.3e-07 59.3 34 76.5
Glyma.04G005300 Glycine max HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 80.0
Gohir.D01G003100 Gossypium hirsutum HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 83.3
MBI05_g07504_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 86.7
Sp7g32640 Schrenkiella parvula HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 86.7
Solyc01g111170.3 Solanum lycopersicum HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 80.0
Sopen01g053230 Solanum pennellii HOM05D000144 ORTHO05D000392 3.3e-07 59.3 30 80.0
AL3G49230 Arabidopsis lyrata HOM05D000144 ORTHO05D000392 4.4e-07 58.9 28 89.3
CSS0024710 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D000392 4.4e-07 58.9 30 83.3
CSS0041381 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D000392 4.4e-07 58.9 30 83.3
Carub.0003s3037 Capsella rubella HOM05D000144 ORTHO05D000392 4.4e-07 58.9 30 86.7
ClCG02G004290 Citrullus lanatus HOM05D000144 ORTHO05D000392 4.4e-07 58.9 30 83.3
A01p33980 Brassica napus HOM05D040366 ORTHO05D033057 5.7e-07 58.5 93 46.2
CDE05G2557 Ceratophyllum demersum HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 86.7
CsaV3_7G000820 Cucumis sativus L. HOM05D000144 ORTHO05D003707 5.7e-07 58.5 31 77.4
DCAR_022952 Daucus carota HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 80.0
Dinv31852 Davidia involucrata HOM05D000144 ORTHO05D000392 5.7e-07 58.5 34 76.5
FvH4_2g01940 Fragaria vesca HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
FAN15G2053 Fragaria x ananassa HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
FAN20G0654 Fragaria x ananassa HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
FAN24G0972 Fragaria x ananassa HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
FAN27G3207 Fragaria x ananassa HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
Glyma.06G005100 Glycine max HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 80.0
Gorai.002G193600 Gossypium raimondii HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 89.3
Lsat_1_v5_gn_4_74720 Lactuca sativa HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 83.3
RcHm_v2.0_Chr6g0245141 Rosa chinensis HOM05D000144 ORTHO05D000392 5.7e-07 58.5 28 85.7
SGA_v2.0_scaffold32G13261 Striga asiatica HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 83.3
vmacro17376 Vaccinium macrocarpon HOM05D000144 ORTHO05D000392 5.7e-07 58.5 30 83.3
CARHR243160 Cardamine hirsuta HOM05D000144 ORTHO05D000392 7.4e-07 58.2 30 86.7
Migut.B00120 Erythranthe guttata HOM05D000144 ORTHO05D000392 7.4e-07 58.2 30 83.3
Thhalv10022880m.g Eutrema salsugineum HOM05D000144 ORTHO05D000392 7.4e-07 58.2 28 89.3
Lsat_1_v5_gn_8_125940 Lactuca sativa HOM05D000144 ORTHO05D000392 7.4e-07 58.2 30 83.3
MBI12_g47802_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D000392 7.4e-07 58.2 28 89.3
PGR083G2744 Punica granatum HOM05D000144 ORTHO05D000392 7.4e-07 58.2 33 78.8
Sabra12G0106900 Salix brachista HOM05D000144 ORTHO05D000392 7.4e-07 58.2 30 80.0
Hund06407 Selenicereus undatus HOM05D000144 ORTHO05D000392 7.4e-07 58.2 30 83.3
THA.LOC104819636 Tarenaya hassleriana HOM05D000144 ORTHO05D000392 7.4e-07 58.2 34 76.5
Ah.12g059230 Amaranthus hybridus HOM05D000144 ORTHO05D000392 9.7e-07 57.8 30 80.0
CARHR106810 Cardamine hirsuta HOM05D000144 ORTHO05D000392 9.7e-07 57.8 30 83.3
Glyma.12G024700 Glycine max HOM05D000144 ORTHO05D000392 9.7e-07 57.8 30 80.0
Gohir.A04G122800 Gossypium hirsutum HOM05D000144 ORTHO05D000392 9.7e-07 57.8 28 85.7
Gohir.D04G164800 Gossypium hirsutum HOM05D000144 ORTHO05D000392 9.7e-07 57.8 28 85.7
Gohir.D12G033300 Gossypium hirsutum HOM05D000144 ORTHO05D000392 9.7e-07 57.8 28 89.3
Gorai.008G034100 Gossypium raimondii HOM05D000144 ORTHO05D000392 9.7e-07 57.8 28 89.3
Gorai.012G153200 Gossypium raimondii HOM05D000144 ORTHO05D000392 9.7e-07 57.8 28 85.7
Hma1.2p1_0638F.1_g193920 Hydrangea macrophylla HOM05D000144 ORTHO05D000392 9.7e-07 57.8 30 83.3
VMungo1127G0523 Vigna mungo HOM05D000144 ORTHO05D000392 9.7e-07 57.8 30 80.0
Cpa.g.sc37.186 Carica papaya HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 80.0
Duzib052G0274 Durio zibethinus HOM05D000144 ORTHO05D000392 1.3e-06 57.4 28 85.7
Duzib132G0734 Durio zibethinus HOM05D000144 ORTHO05D000392 1.3e-06 57.4 28 85.7
Gohir.A01G164200 Gossypium hirsutum HOM05D000144 ORTHO05D000392 1.3e-06 57.4 28 85.7
Gohir.D01G156100 Gossypium hirsutum HOM05D000144 ORTHO05D000392 1.3e-06 57.4 28 85.7
Lj3g0023676 Lotus japonicus HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 80.0
PSO017G1414 Papaver somniferum HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 76.7
Pp3c1_32280 Physcomitrium patens HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 83.3
Potri.005G240200 Populus trichocarpa HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 80.0
Potri.009G130100 Populus trichocarpa HOM05D000144 ORTHO05D000392 1.3e-06 57.4 30 83.3
Thecc.02G066500 Theobroma cacao HOM05D000144 ORTHO05D000392 1.3e-06 57.4 28 85.7
Actinidia31237 Actinidia chinensis HOM05D000144 ORTHO05D000392 1.7e-06 57.0 30 80.0
Ah.01g022620 Amaranthus hybridus HOM05D000144 ORTHO05D000392 1.7e-06 57.0 30 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2738 Anthoceros agrestis HOM05D000144 ORTHO05D000392 1.7e-06 57.0 30 80.0
Carub.0003s2308 Capsella rubella HOM05D000144 ORTHO05D114762 1.7e-06 57.0 32 75.0
Psat0s194g0080 Pisum sativum HOM05D000144 ORTHO05D000392 1.7e-06 57.0 30 80.0
TWI31G0975 Tripterygium wilfordii HOM05D000144 ORTHO05D000392 1.7e-06 57.0 28 82.1
Oeu060418.1 Olea europaea HOM05D000144 ORTHO05D000392 2.2e-06 56.6 30 76.7
Rhsim11G0188100 Rhododendron simsii HOM05D000144 ORTHO05D000392 2.2e-06 56.6 43 55.8
Sabra09G0099500 Salix brachista HOM05D000144 ORTHO05D000392 2.2e-06 56.6 30 80.0
Sed0012620 Sechium edule HOM05D000144 ORTHO05D000392 2.2e-06 56.6 30 80.0
Sed0016958 Sechium edule HOM05D000144 ORTHO05D000392 2.2e-06 56.6 30 80.0
TWI79G0057 Tripterygium wilfordii HOM05D000144 ORTHO05D000392 2.2e-06 56.6 28 82.1
MSTRG.20017 Avicennia marina HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
BcaB04g20625 Brassica carinata HOM05D000144 ORTHO05D015493 2.8e-06 56.2 110 37.3
AUR62013085 Chenopodium quinoa HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 80.0
Cc10_g01600 Coffea canephora HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
Migut.N01299 Erythranthe guttata HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 73.3
Gohir.A04G122701 Gossypium hirsutum HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
Lalb_Chr03g0024721 Lupinus albus HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
Lalb_Chr19g0139481 Lupinus albus HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
Nitab4.5_0000283g0060 Nicotiana tabacum HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 73.3
Nitab4.5_0000980g0090 Nicotiana tabacum HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 73.3
Oeu014461.1 Olea europaea HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
PSO478G5232 Papaver somniferum HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
SGA_v2.0_scaffold58G20426 Striga asiatica HOM05D000144 ORTHO05D000392 2.8e-06 56.2 30 76.7
Hma1.2p1_0159F.1_g070450 Hydrangea macrophylla HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 80.0
PSO170G0778 Papaver somniferum HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 80.0
PSO170G3493 Papaver somniferum HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 76.7
PSO700G0372 Papaver somniferum HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 76.7
Phvul.011G026900 Phaseolus vulgaris HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 76.7
Sp3g30130 Schrenkiella parvula HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 80.0
THA.LOC104807275 Tarenaya hassleriana HOM05D000144 ORTHO05D000392 3.7e-06 55.8 30 83.3
BcaB07g31758 Brassica carinata HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
BcaNung00649 Brassica carinata HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
A01p03660 Brassica napus HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
C01p03930 Brassica napus HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
BolC1t00386H Brassica oleracea HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
BraA01t00350Z Brassica rapa HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
CiPaw.06G124900 Carya illinoinensis HOM05D000144 ORTHO05D000392 4.8e-06 55.5 32 68.8
AUR62010089 Chenopodium quinoa HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
MELO3C013375.2 Cucumis melo HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 76.7
Eucgr.F01666 Eucalyptus grandis HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 76.7
Eucgr.F02659 Eucalyptus grandis HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 76.7
Sabra04G0113200 Salix brachista HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 80.0
SalBow6G0853 Salvia bowleyana HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 76.7
Sc18g0006640 Simmondsia chinensis HOM05D000144 ORTHO05D000392 4.8e-06 55.5 30 76.7
AT2G16600 Arabidopsis thaliana HOM05D000144 ORTHO05D000392 6.3e-06 55.1 28 82.1
Dinv41973 Davidia involucrata HOM05D000144 ORTHO05D000392 6.3e-06 55.1 30 80.0
Gohir.D04G164700 Gossypium hirsutum HOM05D000144 ORTHO05D000392 6.3e-06 55.1 30 73.3
Zm00001eb242390 Zea mays HOM05D000144 ORTHO05D000392 6.3e-06 55.1 30 80.0
Zm00001eb242400 Zea mays HOM05D000144 ORTHO05D000392 6.3e-06 55.1 30 80.0
Atru.chr4.522 Acer truncatum HOM05D000144 ORTHO05D013915 8.2e-06 54.7 34 64.7
AT3G22920 Arabidopsis thaliana HOM05D000144 ORTHO05D031334 8.2e-06 54.7 30 76.7
arahy.Tifrunner.gnm1.ann1.EUIG3C Arachis hypogaea HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 70.0
MSTRG.16880 Avicennia marina HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 76.7
Carub.0003s2305 Capsella rubella HOM05D000144 ORTHO05D031334 8.2e-06 54.7 39 59.0
Ca_19006_v3 Cicer arietinum L. HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 83.3
Ca_30034_v3 Cicer arietinum L. HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 83.3
Glyma.11G098700 Glycine max HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 76.7
Gorai.012G153100 Gossypium raimondii HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 73.3
Manes.11G090400 Manihot esculenta HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 73.3
Medtr4g075290 Medicago truncatula HOM05D000144 ORTHO05D000392 8.2e-06 54.7 30 76.7


User provided reference genes

Program Settings