Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 0.0e+00 1313.5 688 100.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.8e-252 874.4 713 69.6
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 8.4e-243 844.0 705 68.7
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.9e-229 797.7 724 63.5
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-227 793.5 712 65.0
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.9e-211 739.2 695 60.4
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.8e-211 738.8 701 60.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.6e-209 733.4 688 60.8
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 3.7e-206 722.2 689 61.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 4.1e-149 532.7 640 52.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.1e-132 477.2 744 44.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 7.3e-122 442.2 493 51.9
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.4e-120 438.0 421 58.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-118 431.0 406 57.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.8e-113 413.7 702 41.2
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.6e-113 413.3 697 42.2
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.1e-112 410.2 704 41.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 9.0e-112 408.7 680 41.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.2e-111 408.3 697 42.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 3.4e-111 406.8 698 41.1
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 9.3e-109 398.7 697 40.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.1e-107 392.9 692 40.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.1e-107 392.9 692 40.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 8.7e-107 392.1 687 41.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 5.1e-83 313.2 507 39.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.8e-81 306.6 469 39.9
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.3e-81 306.2 549 38.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.1e-80 303.9 545 38.5
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.9e-80 302.8 545 38.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 6.9e-80 302.8 545 38.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.0e-79 301.2 531 38.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.6e-79 300.8 638 35.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 7.7e-79 299.3 504 37.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 2.9e-78 297.4 638 35.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.0e-78 296.6 544 37.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 8.5e-78 295.8 654 32.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-77 295.4 423 44.4
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.5e-77 293.1 608 33.9
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.2e-76 292.0 474 39.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.6e-76 291.6 632 35.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.6e-76 290.4 488 39.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.0e-75 288.9 490 38.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.0e-75 287.3 646 34.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.9e-75 287.0 475 38.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.3e-74 283.9 491 36.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 5.7e-74 283.1 504 38.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 5.7e-74 283.1 597 34.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.7e-73 281.6 504 38.1
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.2e-73 281.2 442 39.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.3e-73 279.6 485 39.6
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.3e-73 279.6 494 38.3
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.1e-72 278.9 522 36.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.8e-72 278.1 461 38.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.8e-72 278.1 472 37.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.4e-72 277.7 509 36.3
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 7.0e-72 276.2 519 37.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.1e-72 275.8 574 35.2
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.5e-71 275.0 457 37.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.0e-71 274.6 455 37.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.9e-71 273.1 522 36.6
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 5.9e-71 273.1 523 36.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.0e-70 272.3 413 40.7
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.9e-70 270.8 456 37.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 9.4e-69 265.8 526 34.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.2e-68 265.4 486 37.2
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.0e-68 262.7 567 33.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-67 261.9 438 37.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.8e-67 261.5 530 34.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.0e-67 260.8 500 35.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.7e-67 259.6 461 36.7
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 8.8e-67 259.2 499 34.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-66 258.8 440 35.0
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.6e-66 257.7 680 30.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 9.7e-66 255.8 724 31.4
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.2e-65 254.6 532 34.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.2e-65 254.6 641 32.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.3e-65 253.1 731 30.5
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.2e-65 252.7 752 31.0
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.8e-64 251.5 633 32.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.8e-64 251.5 596 32.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.1e-64 250.8 580 32.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.1e-64 250.4 633 32.4
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.0e-64 249.6 772 30.3
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-63 248.4 757 30.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.0e-63 248.1 521 34.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 5.9e-63 246.5 524 33.8
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-62 245.4 575 33.2
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.7e-62 245.0 699 30.8
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.9e-62 244.2 709 29.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.8e-62 243.8 413 37.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.5e-62 243.0 473 34.9
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.9e-61 241.5 579 32.0
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.2e-61 240.4 459 36.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 5.5e-61 240.0 496 36.7
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.4e-61 239.2 412 35.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 9.4e-61 239.2 574 32.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.1e-60 238.0 464 35.8
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.6e-60 237.3 504 34.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.6e-60 237.3 525 34.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.6e-60 237.3 522 34.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.7e-60 236.9 441 35.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 8.0e-60 236.1 564 31.7
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 4.0e-59 233.8 538 34.6
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-58 231.9 643 30.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 9.7e-58 229.2 434 36.6
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.2e-57 228.0 408 34.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.8e-57 227.6 421 36.1
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 5.3e-56 223.4 617 31.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 5.3e-56 223.4 464 32.5
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.6e-55 221.9 529 33.8
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-55 221.9 438 36.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.3e-54 218.8 636 30.7
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.2e-54 218.0 671 31.0
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-53 215.3 696 30.3
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.5e-53 215.3 697 30.3
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.2e-53 214.2 561 29.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.7e-52 211.1 551 32.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.1e-52 209.9 414 35.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.3e-51 208.0 448 33.3
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.0e-51 207.6 563 30.9
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 3.4e-50 204.1 418 35.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.8e-49 200.3 694 27.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.1e-48 197.2 734 28.2
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.9e-47 193.4 257 44.4
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.9e-46 191.0 437 35.7
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.6e-46 189.9 364 36.3
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.2e-42 179.1 678 29.8
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.5e-42 178.7 473 31.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.2e-40 171.0 228 45.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.0e-40 169.9 283 36.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.0e-39 168.3 706 29.5
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 3.3e-37 161.0 327 34.6
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 8.0e-36 156.4 495 29.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 8.0e-36 156.4 284 35.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.4e-32 144.8 140 55.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 9.2e-32 142.9 527 25.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.8e-27 128.6 370 31.4
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.2e-24 117.9 274 31.4
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 5.4e-24 117.1 137 48.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 7.8e-23 113.2 144 46.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.7e-22 112.1 654 24.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.4e-19 102.4 126 44.4
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-18 99.4 270 31.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.2e-18 99.4 276 31.2
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.6e-18 98.2 164 40.9
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.7e-17 95.5 92 44.6
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.7e-17 94.4 176 39.2
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 4.6e-15 87.4 172 37.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 7.8e-15 86.7 80 53.8
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.3e-13 80.9 100 39.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.3e-13 80.1 101 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.6e-13 79.7 359 22.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.9e-11 73.2 72 37.5
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 5.8e-10 70.5 360 22.5
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 3.8e-09 67.8 165 33.9
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.4e-09 66.6 71 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.0e-06 59.7 341 21.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.3e-06 59.3 51 56.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-06 56.6 89 30.3


User provided reference genes

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