Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.1e-154 551.2 350 100.0
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.4e-128 464.5 350 86.9
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 9.9e-127 458.4 350 85.7
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 7.1e-125 452.2 357 84.0
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.7e-124 450.3 358 84.1
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.5e-119 434.5 353 81.0
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 6.2e-113 412.5 358 78.8
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.4e-112 411.4 353 77.9
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.4e-112 410.6 344 79.7
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.0e-111 407.5 355 79.7
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 4.2e-109 399.8 355 76.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 4.2e-109 399.8 355 76.6
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.0e-99 368.6 320 79.1
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 7.4e-98 362.5 345 73.9
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 4.2e-69 266.9 330 58.2
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 5.7e-66 256.5 295 62.0
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.2e-65 254.6 329 58.4
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.2e-65 254.6 291 62.5
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 3.5e-63 247.3 266 64.3
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 3.5e-63 247.3 266 64.3
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 3.5e-63 247.3 294 58.5
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.5e-63 247.3 294 58.5
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.5e-62 242.7 335 54.9
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 8.5e-62 242.7 295 59.3
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.9e-61 241.5 264 57.6
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.5e-61 240.0 294 59.2
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 9.4e-61 239.2 305 58.7
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.1e-60 238.0 299 62.2
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 2.7e-60 237.7 289 57.8
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 6.1e-60 236.5 264 57.2
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 3.0e-59 234.2 289 57.8
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 4.0e-59 233.8 298 58.1
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 6.8e-59 233.0 289 57.8
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 6.8e-59 233.0 262 63.0
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 8.8e-59 232.6 281 60.5
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.5e-58 231.9 268 64.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 5.7e-58 229.9 266 61.7
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 9.7e-58 229.2 293 58.4
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.3e-57 228.8 236 67.8
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.3e-57 228.8 325 53.2
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.4e-56 225.3 268 61.2
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-56 225.3 267 60.7
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.8e-56 224.9 261 58.6
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.4e-56 224.6 315 42.5
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 3.1e-56 224.2 328 59.8
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.3e-56 223.4 267 60.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.3e-56 223.4 267 60.3
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 7.0e-56 223.0 297 56.9
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 2.0e-55 221.5 267 61.0
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.7e-55 221.1 296 53.7
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.5e-55 220.3 332 54.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 5.9e-55 219.9 263 53.6
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.7e-54 218.4 316 54.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.7e-54 218.4 284 60.9
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 2.2e-54 218.0 273 58.2
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.9e-54 217.6 268 58.6
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.9e-54 217.6 316 53.8
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 6.5e-54 216.5 249 63.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.1e-53 215.7 298 54.4
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 3.2e-53 214.2 269 56.1
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 3.0e-51 207.6 300 56.0
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 6.8e-51 206.5 263 60.5
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.5e-50 205.3 250 65.2
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.0e-50 204.9 301 53.5
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.3e-49 202.2 261 58.2
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-49 202.2 266 58.6
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.7e-49 201.8 282 54.3
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.7e-49 201.8 275 57.5
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.8e-49 200.3 261 60.2
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.8e-48 198.4 258 60.1
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 3.1e-48 197.6 273 58.2
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 3.1e-48 197.6 261 56.7
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 4.1e-48 197.2 278 57.6
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 2.3e-46 191.4 258 57.4
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 3.6e-44 184.1 254 56.7
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 7.5e-42 176.4 248 59.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.7e-39 167.9 226 58.8
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 7.8e-39 166.4 217 65.0
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 1.0e-38 166.0 227 60.4
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.9e-38 164.1 219 60.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.0e-38 163.7 294 36.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.9e-37 161.8 224 60.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 6.1e-36 156.8 231 60.6
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.0e-35 156.0 150 52.7
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.1e-35 154.5 212 64.6
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 4.0e-35 154.1 260 50.4
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 8.9e-35 152.9 218 64.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 8.9e-35 152.9 220 62.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 2.6e-34 151.4 220 58.2
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 2.6e-34 151.4 212 63.2
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 3.7e-33 147.5 272 51.8
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.1e-32 146.0 135 51.9
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.9e-32 145.2 273 48.4
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 3.0e-30 137.9 220 58.2
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.2e-28 132.5 249 55.0
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.6e-28 132.1 220 53.2
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 2.1e-28 131.7 320 44.4
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-27 128.3 205 59.5
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 2.8e-20 104.8 90 52.2
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.9e-18 96.3 82 57.3
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 2.4e-16 91.7 272 30.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 3.5e-15 87.8 84 46.4
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 4.6e-15 87.4 279 26.9
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 6.6e-14 83.6 56 66.1
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 4.7e-12 77.4 59 69.5
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 8.9e-11 73.2 163 27.0
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.9e-09 68.2 83 44.6
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.9e-09 67.4 56 53.6
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.9e-09 67.4 56 53.6
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 6.4e-09 67.0 48 58.3
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-08 65.1 55 50.9
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 6.0e-07 60.5 40 65.0


User provided reference genes

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