Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.2e-179 632.1 584 100.0
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.1e-166 590.9 585 95.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 4.1e-166 589.0 585 94.5
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 5.8e-160 568.5 587 87.6
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 7.8e-157 558.1 587 90.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-155 554.3 585 92.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 8.9e-153 544.7 584 89.4
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.5e-152 543.9 590 89.2
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 7.6e-144 515.0 590 86.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 4.6e-141 505.8 563 88.5
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 4.6e-133 479.2 562 87.2
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.5e-131 473.4 650 76.2
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.7e-127 460.7 585 83.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 6.2e-114 415.6 583 75.3
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.9e-111 406.0 585 75.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.4e-111 405.2 585 74.7
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.4e-110 404.4 518 88.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.2e-109 401.4 585 75.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.2e-109 401.4 585 77.1
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 2.1e-109 400.6 585 76.8
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 6.7e-108 395.6 585 76.1
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.9e-107 394.0 581 75.9
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.3e-106 391.3 582 77.1
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.3e-106 391.3 585 75.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.8e-105 387.5 585 75.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.0e-100 371.7 587 71.2
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.8e-100 370.9 583 73.4
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.0e-100 370.2 582 68.0
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 8.7e-100 368.6 585 71.5
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.5e-99 367.9 581 76.1
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.3e-98 364.8 581 66.6
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 2.4e-97 360.5 583 72.4
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.7e-95 354.4 581 71.3
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 7.9e-93 345.5 585 69.9
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 3.0e-92 343.6 588 67.5
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.1e-92 342.8 655 60.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.5e-91 341.3 591 67.9
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 7.4e-91 339.0 583 71.4
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.8e-90 336.3 505 77.6
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.4e-89 334.0 583 55.1
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 5.3e-89 332.8 585 69.9
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 3.4e-88 330.1 583 67.2
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.5e-88 329.7 574 61.0
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 2.2e-87 327.4 591 68.4
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 2.2e-87 327.4 585 74.7
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 2.9e-87 327.0 585 69.4
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 2.5e-86 323.9 505 72.7
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 2.5e-86 323.9 585 67.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.2e-86 323.2 600 67.2
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 7.2e-86 322.4 585 73.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.4e-84 318.2 602 64.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 6.3e-82 309.3 585 69.6
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 6.3e-82 309.3 581 69.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.4e-81 308.1 585 67.0
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.8e-81 307.8 585 68.9
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 2.0e-80 304.3 585 67.0
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.0e-79 302.0 585 66.2
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-79 301.2 589 57.9
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 6.1e-77 292.7 564 70.4
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 8.0e-77 292.4 583 66.2
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.0e-76 290.0 505 70.3
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 5.2e-76 289.7 530 69.2
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.5e-75 288.1 556 64.0
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 2.0e-75 287.7 585 67.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.0e-75 287.7 583 66.4
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.6e-75 287.3 582 67.2
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 3.3e-75 287.0 446 79.8
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.8e-74 283.9 504 59.9
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.8e-74 283.9 583 66.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 8.2e-74 282.3 319 61.4
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.4e-73 280.8 585 66.0
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 7.0e-73 279.3 602 65.8
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 9.1e-73 278.9 630 63.3
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 2.2e-71 274.2 585 65.5
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.0e-71 273.1 314 61.1
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.5e-70 271.6 582 66.3
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.9e-70 271.2 563 71.9
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 9.4e-70 268.9 685 58.8
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 9.4e-70 268.9 598 58.5
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.7e-69 267.3 582 65.8
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.0e-68 263.8 586 65.4
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.0e-68 263.5 596 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.2e-67 261.9 592 60.6
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.4e-65 255.0 587 63.5
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.4e-65 255.0 608 57.4
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 5.4e-65 253.1 412 62.4
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 7.0e-65 252.7 326 68.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.0e-63 246.5 584 66.1
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.5e-62 245.0 564 64.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 2.1e-61 241.1 410 61.5
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 6.1e-61 239.6 558 57.7
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.0e-60 237.3 580 61.2
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.6e-59 234.2 583 63.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 7.5e-59 232.6 562 59.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 3.7e-58 230.3 562 63.5
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 4.9e-58 229.9 594 58.2
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.2e-56 225.3 586 61.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 2.7e-56 224.2 588 61.1
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.1e-53 214.5 301 54.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.1e-53 214.5 558 38.2
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 3.6e-45 187.2 584 59.8
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 4.0e-44 183.7 542 59.0
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.9e-41 174.9 226 55.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.5e-35 155.2 198 62.6
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 2.1e-32 144.8 146 56.2
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.7e-26 125.2 120 66.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 2.5e-22 111.3 145 65.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 2.5e-22 111.3 145 65.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 2.5e-22 111.3 145 65.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 9.6e-22 109.4 75 68.0
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-21 109.0 75 69.3
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-21 109.0 75 69.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.6e-21 107.5 75 68.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 8.1e-21 106.3 75 68.0
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.2e-19 102.4 264 31.1
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.5e-19 102.1 98 57.1
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 5.1e-15 87.0 101 74.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 4.3e-14 84.0 150 41.3
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 2.1e-13 81.6 60 61.7
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.4e-12 78.2 40 95.0
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 9.0e-12 76.3 53 67.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 2.6e-11 74.7 75 46.7
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.6e-11 74.7 97 72.2
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.4e-11 74.3 450 36.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 4.9e-10 70.5 46 73.9
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.1e-09 69.3 75 49.3
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 2.3e-07 61.6 302 28.8


User provided reference genes

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