Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 0.0e+00 1106.3 563 100.0
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 0.0e+00 1083.2 563 97.2
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 3.9e-312 1074.7 563 96.1
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 3.9e-312 1074.3 563 96.4
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 5.8e-311 1070.1 563 95.9
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 3.8e-310 1067.4 563 95.7
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.1e-309 1065.8 563 95.4
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 7.9e-308 1059.7 563 94.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 4.4e-306 1053.9 561 95.4
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.3e-305 1052.4 563 94.0
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 8.0e-300 1033.1 585 90.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 6.5e-294 1013.4 564 90.1
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 3.0e-275 951.4 570 84.9
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 4.6e-247 857.8 575 76.5
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 5.6e-245 850.9 572 76.0
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.6e-244 848.2 572 75.7
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.8e-243 845.9 573 76.6
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.1e-243 845.1 571 75.8
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 4.4e-242 841.3 574 75.4
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 4.9e-241 837.8 571 75.5
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.4e-240 836.3 568 75.9
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.4e-240 835.5 573 74.7
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 4.2e-240 834.7 573 74.2
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.2e-240 833.6 572 75.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 9.2e-240 833.6 569 75.9
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 9.2e-240 833.6 568 75.7
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 2.7e-239 832.0 572 76.2
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 7.8e-239 830.5 570 74.7
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 3.9e-238 828.2 573 74.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 5.6e-237 824.3 570 75.3
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 9.6e-237 823.5 570 75.3
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.2e-236 823.2 573 74.3
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.6e-236 821.6 577 74.2
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 3.6e-236 821.6 573 73.8
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.8e-235 819.3 568 74.5
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 9.0e-235 817.0 570 74.6
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 1.5e-234 816.2 572 73.8
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 3.4e-234 815.1 573 72.6
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 6.4e-233 810.8 579 73.6
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 3.2e-232 808.5 561 75.0
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 9.3e-232 807.0 575 73.2
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.2e-231 806.6 569 73.6
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.7e-231 805.4 640 67.0
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.7e-230 802.7 574 71.4
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.7e-230 802.7 569 72.1
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.3e-230 802.4 566 72.8
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 3.0e-230 802.0 569 73.1
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.1e-230 801.2 562 72.8
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 2.5e-229 798.9 566 72.1
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 2.5e-229 798.9 555 75.0
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 6.2e-228 794.3 573 71.4
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.4e-227 793.1 567 72.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 5.3e-227 791.2 549 74.1
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 5.3e-227 791.2 573 71.0
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 5.3e-227 791.2 552 74.3
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.7e-225 786.2 574 72.0
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 1.1e-224 783.5 632 66.9
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.1e-224 783.5 568 72.2
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 7.1e-224 780.8 551 74.4
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.5e-223 778.5 567 70.7
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 1.8e-222 776.2 592 68.9
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 5.1e-222 774.6 573 71.4
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 6.7e-222 774.2 559 71.7
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 8.7e-222 773.9 557 72.0
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.5e-221 773.1 567 70.2
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 9.6e-221 770.4 565 71.0
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 3.7e-220 768.5 563 70.9
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 6.2e-220 767.7 563 70.3
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.4e-219 766.5 564 70.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 5.3e-219 764.6 563 70.5
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 9.0e-219 763.8 572 71.3
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.8e-218 761.1 618 66.8
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.8e-217 758.4 573 70.7
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.2e-215 753.4 576 68.8
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.7e-215 752.3 569 68.7
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 7.9e-215 750.7 568 68.5
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 4.3e-213 745.0 591 67.3
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 6.2e-212 741.1 557 69.8
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.8e-211 739.6 558 69.5
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 4.6e-207 724.9 540 71.1
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 3.1e-203 712.2 566 66.1
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.5e-202 708.4 575 67.5
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.9e-202 708.0 566 64.1
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 2.1e-199 699.5 612 63.6
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 6.7e-198 694.5 554 67.5
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 2.5e-197 692.6 589 64.7
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 3.7e-196 688.7 517 69.1
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.9e-184 649.8 433 78.1
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.0e-174 617.5 444 73.2
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.3e-172 610.5 567 56.8
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 9.4e-168 594.3 690 50.1
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.2e-167 594.0 321 94.7
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 6.8e-166 588.2 568 54.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.4e-155 553.1 561 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.4e-149 532.3 568 50.7
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.6e-138 497.3 555 50.6
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.6e-103 380.9 273 67.8
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.5e-98 363.2 277 68.2
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.5e-88 331.3 277 61.7
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 6.5e-84 315.8 225 73.8
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.2e-68 264.2 197 69.5
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.1e-50 204.5 164 64.6
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.0e-49 202.2 302 47.4
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 3.4e-48 197.2 242 43.4
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.0e-41 175.6 116 75.0
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.0e-41 174.1 120 71.7
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 8.3e-39 166.0 120 69.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 3.2e-38 164.1 149 58.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.4e-33 148.7 129 57.4
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.7e-31 141.7 117 65.8
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 5.6e-27 126.7 178 46.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.4e-24 117.5 174 43.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.4e-23 113.2 94 59.6
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.4e-22 110.2 191 39.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 6.2e-18 96.7 123 44.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.5e-16 92.0 84 58.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.4e-14 85.5 95 46.3
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-14 85.1 137 42.3
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 7.8e-13 79.7 45 82.2
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 9.6e-11 72.8 57 73.7
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-10 72.0 212 29.7
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.1e-09 69.3 51 74.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-09 69.3 176 31.8
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.4e-09 68.9 129 36.4
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 4.0e-09 67.4 158 34.8
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 1.2e-08 65.9 37 86.5
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 4.9e-07 60.5 93 37.6


User provided reference genes

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