Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1997.6 1023 100.0
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1889.8 1023 95.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1876.7 1024 94.4
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1859.0 1021 91.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1834.7 1023 92.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1815.4 1025 90.4
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1805.4 1025 89.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1803.1 1023 89.8
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1800.0 1025 89.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1752.3 1025 88.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1748.8 1025 88.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1748.4 1025 88.3
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1728.8 1032 86.3
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1709.5 1025 85.4
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1704.5 1029 85.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1701.8 1021 85.2
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1680.2 1041 83.0
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1673.7 1024 83.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1601.3 1034 80.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1580.8 1041 79.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 906 82.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1444.9 985 75.1
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1436.0 1035 72.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1434.1 1039 72.5
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 1014 73.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1425.2 1035 72.0
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1424.8 1035 71.9
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1422.5 1014 73.0
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1034 72.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1419.8 1014 72.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1037 71.4
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1036 72.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1025 72.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1014 72.6
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 1023 72.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1025 72.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1399.8 1038 70.8
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1013 71.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1392.5 1041 69.9
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1013 71.3
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 1035 69.9
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1032 71.5
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1386.3 999 71.6
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1379.8 1040 70.4
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1017 71.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1375.5 1013 71.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1372.5 977 72.5
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1370.9 1017 71.4
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1367.8 1021 70.4
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1367.4 1020 70.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1036 70.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1031 70.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1039 69.0
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1013 70.5
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 1042 69.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 1053 69.3
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1041 69.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1041 69.3
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1360.1 1046 69.1
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1360.1 1018 70.0
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1357.0 1041 68.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1355.9 1058 67.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1354.7 1041 68.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1018 69.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1353.6 1058 67.5
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1351.7 1021 70.1
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1351.7 1021 70.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1351.3 1027 69.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1350.5 1040 68.8
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1023 68.7
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1023 68.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1014 69.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1040 68.5
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1037 68.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1013 69.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1072 67.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1332.8 1017 69.0
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1059 66.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1328.9 1037 69.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1327.8 1021 68.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1065 67.8
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1325.1 1021 68.3
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1324.7 1022 69.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1323.9 1020 68.5
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1021 67.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1321.6 1044 67.7
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1029 68.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1010 68.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1318.5 985 70.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 1017 66.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 985 70.1
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 983 70.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1313.5 1059 66.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1311.2 1012 68.7
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 984 68.1
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 1023 67.1
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 984 68.4
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1295.0 1001 67.1
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 933 71.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1290.4 1025 67.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1290.4 1040 66.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1277.3 1029 66.6
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 1012 66.1
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1275.0 1004 66.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1041 65.4
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 978 67.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 1012 65.4
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1257.3 1012 65.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1255.0 1039 64.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1253.4 938 71.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1245.7 904 73.6
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1243.0 1026 64.8
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1239.2 904 72.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1238.4 1000 66.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 1045 63.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1223.4 1020 65.5
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1221.1 999 64.1
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1216.1 1050 63.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1180.6 1001 63.2
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1160.2 938 66.1
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1158.7 981 62.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1150.2 998 60.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1129.8 994 62.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1119.8 1003 61.6
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1117.8 1021 59.7
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1104.4 1077 57.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1097.8 1056 57.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1091.6 984 59.5
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.8e-295 1018.8 1009 57.7
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.5e-285 984.9 897 58.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.4e-278 963.4 806 64.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.9e-277 958.0 1055 54.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.8e-268 928.7 811 60.5
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.1e-254 882.1 1010 50.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.0e-252 875.2 969 49.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 5.6e-251 871.7 1001 50.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.3e-251 871.3 972 50.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.3e-249 866.3 739 66.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 9.5e-243 844.3 727 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.3e-228 796.6 968 46.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.4e-222 777.3 821 51.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.1e-214 751.1 796 52.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.8e-204 717.2 908 46.7
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.6e-202 710.7 405 87.7
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.4e-193 681.0 730 57.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 4.2e-190 669.5 656 56.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.7e-179 631.7 835 48.4
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.4e-171 605.5 951 41.1
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.5e-167 592.4 631 54.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.9e-150 537.7 623 50.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-147 528.1 590 51.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 3.7e-146 523.5 655 49.6
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.6e-139 500.7 1106 34.4
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.3e-111 407.9 638 43.1
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 8.1e-109 399.4 539 45.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.1e-101 374.8 291 69.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.2e-85 320.1 251 70.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.5e-83 315.5 282 62.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.0e-79 302.8 315 55.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.1e-68 264.6 252 57.5
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 4.5e-67 260.8 168 81.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.2e-66 258.5 654 32.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.9e-65 255.4 163 82.2
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 5.3e-60 237.3 1102 25.0
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.1e-52 211.5 215 52.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.2e-50 205.3 929 25.2
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-45 189.5 152 58.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.8e-45 188.3 212 45.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.8e-31 142.5 166 50.0
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.8e-29 135.2 129 51.2
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-28 132.9 147 47.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.0e-22 112.5 113 47.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.4e-20 104.4 95 51.6
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.4e-20 104.4 95 51.6
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.6e-14 85.5 63 71.4
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 3.7e-13 81.6 57 71.9
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.6e-11 74.7 64 56.2


User provided reference genes

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