Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1758.0 897 100.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1657.1 897 93.5
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1627.5 895 91.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1622.8 897 91.9
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1617.4 904 91.4
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1596.3 897 90.7
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1596.3 898 90.8
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1572.4 916 88.3
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1569.3 904 89.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1568.5 897 89.0
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1561.2 900 89.4
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1557.3 920 87.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1525.4 904 87.5
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1491.9 907 84.3
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1488.8 927 82.1
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1483.4 943 82.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1286.9 902 74.2
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 900 73.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1254.2 906 72.1
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1253.4 889 73.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1253.4 915 72.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 900 71.4
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 890 73.0
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 901 73.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1249.2 901 72.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1246.9 904 72.1
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1246.1 904 72.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 874 74.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 873 74.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 904 72.1
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1240.7 873 73.2
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1238.0 876 74.2
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 879 71.9
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 906 71.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 903 71.8
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1230.7 874 72.9
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 909 70.3
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 879 71.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 900 71.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 914 71.6
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 934 68.8
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 896 71.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 902 70.8
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 902 70.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 903 69.4
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 902 70.8
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 875 71.4
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 873 71.8
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 893 70.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 883 71.5
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 875 71.9
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 894 69.7
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 872 71.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 905 69.2
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 904 69.7
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1186.8 904 69.5
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 901 68.5
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 918 68.0
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 878 71.5
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 890 69.4
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 896 69.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1179.9 906 68.2
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 902 68.2
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 871 69.8
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 910 68.6
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 872 70.4
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 909 67.5
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1172.5 895 67.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 911 68.7
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 911 68.6
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 911 68.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 909 68.0
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 896 69.3
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 934 66.6
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1163.3 888 68.1
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 874 70.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 879 68.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1159.1 893 68.4
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1155.6 887 68.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 858 69.8
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1151.7 884 68.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 873 67.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 899 67.2
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 906 68.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 903 67.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 904 66.8
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1144.4 883 67.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1142.1 929 67.3
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 858 69.3
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1136.7 907 66.8
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1136.3 904 66.6
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1135.6 925 64.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1127.9 887 67.6
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1125.2 874 68.0
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1118.6 858 68.2
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 939 63.8
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1104.0 854 69.2
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1101.7 894 65.4
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1099.0 993 61.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1096.3 871 64.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1092.8 900 63.2
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1089.3 1028 59.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1088.6 893 65.6
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1086.6 893 65.4
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1077.8 920 62.4
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1076.2 792 68.3
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 6.1e-312 1073.9 896 64.3
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.9e-310 1067.0 841 67.1
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 3.0e-309 1065.1 871 64.2
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 7.0e-298 1027.3 870 61.3
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 7.7e-289 997.3 879 60.5
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 8.2e-283 977.2 884 62.3
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.8e-277 959.5 750 66.4
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.1e-270 936.0 745 66.3
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 3.6e-270 935.3 730 68.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.0e-269 933.7 960 56.2
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 2.2e-267 926.0 907 58.3
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.0e-265 919.5 728 68.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 3.5e-265 918.7 878 54.2
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 7.5e-260 901.0 598 74.2
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.3e-256 890.2 896 54.5
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 8.9e-253 877.5 505 81.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.3e-248 862.8 888 53.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.4e-234 817.0 713 61.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.6e-183 646.7 671 54.4
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.4e-173 613.6 371 78.2
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-172 610.5 384 75.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.5e-170 603.6 352 81.5
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.8e-166 590.1 341 80.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.4e-165 587.8 571 58.8
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.5e-162 575.9 360 75.8
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.0e-153 545.4 561 59.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.5e-151 538.9 456 63.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 5.6e-138 496.1 891 36.9
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.1e-133 481.9 703 41.7
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.1e-133 481.9 990 35.7
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.9e-125 454.5 297 78.8
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 6.0e-124 449.5 305 72.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-110 405.2 475 56.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.8e-103 379.8 544 46.5
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 7.9e-100 369.4 991 31.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.9e-90 338.2 598 39.6
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 4.3e-74 283.9 165 80.6
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.7e-74 282.7 354 54.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.9e-61 241.9 147 91.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.0e-51 209.5 327 40.1
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 6.8e-43 180.3 104 81.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 9.5e-37 159.8 107 72.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-36 159.5 107 69.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.1e-29 136.3 83 74.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.6e-20 104.8 80 65.0
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.3e-19 102.1 77 66.2
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.9e-17 95.1 61 72.1
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-14 84.7 88 52.3
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 4.7e-12 77.8 88 51.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.1e-12 77.0 72 52.8
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.3e-11 75.5 97 54.6
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.1e-11 75.1 45 75.6
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 6.8e-11 73.9 66 53.0
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.9e-09 68.6 53 69.8
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.1e-08 66.6 58 58.6
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 7.1e-08 63.9 40 70.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 7.1e-08 63.9 52 61.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.3e-06 59.7 47 63.8


User provided reference genes

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